Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03212 ATGGCTAGACCACAACAAAGATTTCGAGGTGTTCGACAAAGGCATTGGGGTTCTTGGGTCTCTGAGATTCGCCATCCTATATTGAAAACTAGAATATGGCTTGGTACATTTGAAACAGCTGAAGATGCTGCAAGAGCCTACGATGAAGCAGCTAGACTAATGTGTGGTTCAAGGACAAGAACAAATTTCCCTCTAAACTCCAATGTATCGTCTTCAAAGATTTTATCACCAACTTTAACAGCTAAATTGCATAGGTGCTATGTAGCTTCTTTGCAATTGACTAGGAAAATGTTAGTAGTTCCACCACCAACACAAAATGTCATGATTTCCACAACAACATCAACAAATGGTAAAGCATTGGAAAATGGTAATTCACATGAGTTATTTAAGGCTCTCGAAGAAGATGATCATCAAATAGAGCAAATGATTGAAGAGCTTCTTGATTATGGGTCTATTGAACTCTGTTCTGCCACACACAATACTCAAGAATCTGCTGGACAAACTATTTAA 510 0.3824 MARPQQRFRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGSRTRTNFPLNSNVSSSKILSPTLTAKLHRCYVASLQLTRKMLVVPPPTQNVMISTTTSTNGKALENGNSHELFKALEEDDHQIEQMIEELLDYGSIELCSATHNTQESAGQTI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03212 169 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Car04g03212 169 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Car04g03212 169 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Car04g03212 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 125 158 - -
Car04g03212 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 120 - -
Car04g03212 169 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Car04g03212 169 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Car04g03212 169 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Car04g03212 169 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Car04g03212 169 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Car04g03212 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 125 158 - -
Car04g03212 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03212 Car-Chr4 60488529 60489225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03212 1 156 AP2-EREBP Transcription Factor Family AT5G25190 62.500 2.29e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g03212 AP2 9.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03212 - - vvi:100252609 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03212 04 60488529 60489225 Car05g02926 05 74240333 74241373 PCT