Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03203 ATGGCTTACCATAACCAACACCTCTCACAACAACTACCAATCCACCATTTCACAGAACAAACCAATTCATTCCGTTCCATATTACCAGACCAATTACCTTCCTCACCCGACCCTAACTCCAAACCTGGTTCCGATCCAAACCAACATCACACACTCCAAACCACGCCTAATTGGCTCAACAACGCCCTCCTTCGTACTCactacaccgacaacaataacaaccacaacaataacgacgacGTTACTAACGacgttaacaataacgatactaacgttaacgccgttaacggtaacgCCGCTTCCAATTTTCTTAACCTCCAAACGTCTTCCGACTCAAACCAATGGCTCGCACGCTCGATTCTCCACCGGCACCATGGCGAAGTAATCGACGACGTCGGAGTTATCGCCggagccggaggggagagaggagtaaatgaattaggtgaattgaagggagaaggagtcggagggaaggaggagacggtggtcggagacggaggaggaggGATGGTGAACTGGCAGACGGGGAGGTGGAAGGCGGAGATAATGGCGCATCCGTTGTATGAACAGTTGTTGTCGGCACACGTGGCGTGTTTGAGAATAGCGACGCCGGTGGATCAGTTACCGAGGATAGATGCTCAGTTGGCACAGTCTCAGAATGTGGTCGCCAAATACTCTGCTGCGTTTGGACAGAACGTCGTCGGAGTAGATGACAAAGAACTCGACCACTTCATGTCGCACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAACTACAACAACATGTCAGAGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATAGAGCAATCTTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACGGGGGCAACAATGTCCGACGATGAAGACGACCAAGTAGATAGTGACGTCAACATGTTCGACAATAGTTTGGATGGCGCAGATACCATGGGATTTGGCCCTCTTATACCTACTGAGAATGAACGATCCCTCATGGAGCGTGTTCGGCAAGAGTTAAAGCATGAATTGAAACATGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCCGGGAAACTTCCCGGCGACACAACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACTGAGGAAGACAAGACAAGGTTGGTGCAAGAAACTGGTTTACAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACACTAATCCTTCAACTTCTACCGTCTTGAAGAGCAAACGCAAAAGGTGA 1323 0.4044 MAYHNQHLSQQLPIHHFTEQTNSFRSILPDQLPSSPDPNSKPGSDPNQHHTLQTTPNWLNNALLRTHYTDNNNNHNNNDDVTNDVNNNDTNVNAVNGNAASNFLNLQTSSDSNQWLARSILHRHHGEVIDDVGVIAGAGGERGVNELGELKGEGVGGKEETVVGDGGGGMVNWQTGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAAFGQNVVGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDVNMFDNSLDGADTMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHTNPSTSTVLKSKRKR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03203 440 Gene3D - 362 434 - -
Car04g03203 440 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677
Car04g03203 440 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Car04g03203 440 CDD homeodomain 366 427 IPR001356 GO:0003677
Car04g03203 440 Pfam ELK domain 343 364 IPR005539 GO:0003677
Car04g03203 440 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 440 - -
Car04g03203 440 SUPERFAMILY Homeodomain-like 365 428 IPR009057 -
Car04g03203 440 ProSiteProfiles ELK domain profile. 343 363 IPR005539 GO:0003677
Car04g03203 440 SMART ELK_2 343 364 IPR005539 GO:0003677
Car04g03203 440 MobiDBLite consensus disorder prediction 67 96 - -
Car04g03203 440 Pfam KNOX2 domain 236 285 IPR005541 GO:0003677|GO:0005634
Car04g03203 440 Pfam KNOX1 domain 179 219 IPR005540 GO:0003677|GO:0005634
Car04g03203 440 SMART KNOX1_2 176 220 IPR005540 GO:0003677|GO:0005634
Car04g03203 440 SMART KNOX2_2 230 286 IPR005541 GO:0003677|GO:0005634
Car04g03203 440 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 43 440 - -
Car04g03203 440 MobiDBLite consensus disorder prediction 27 54 - -
Car04g03203 440 SMART HOX_1 365 430 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03203 Car-Chr4 60383480 60388085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03203 1 440 Homeobox Transcription Factor Family AT5G25220 65.351 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car04g03203 KNOX2 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03203 - - cam:101494477 801.586