Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03200 ATGGAATCCAATGCATTTGCATCTGATATGTCAAAGAGTGATTTGTCACATATTTTGAATTCGGCTGCAGCCACATTAAGAAAACAACCAATAACAAACCAGGATGGTTTCATCATTCCGCTCAAGGGTTTAAATGCTTTTACACAGAACAGCCAGTATGACCAGGGGAAAACCAAGTTAATGGAATCTAATGTTGCTATTTGTACACATTCATCAAACTTTTTTGGAGCTCAACTAGATGATGGTTGTCAGTCTATACCTCCTTTCCTTGATACCCTGAAAAGGAATGGATATTTGTCAATTATCCAGTCAACACAAATTCCAACAAGCCATCGAAAAGACCTTGAATGCATCAAAAAGGAGAATGTAAAGAGTAGTCTACTAGGAAAAGATGCAACTTCCTCTAATATTGAGCTTAGGCTTGGTCAACCACCTCAGGCTGGAAATCCAGTTTCATCATTTGCAGAATCACCAATGTTTACCTTTGCCAGTTCTCCAAAACTGCATTCCCTGAAGCAGATGACTAATAACCTTAGCAGGAAGGTGGAATTGCAGAAAAATTTTAGCCACATTGCTGGTACAATCGAAATGCGTGAGGAACCAACTCTACTTAAACCCCCAAACTATATGTCTGGATTTAGTAATATTTCAGGTGCTGTTACAGCTAGCTCACAAACTGACTATGTGGCCAAGAGTTCATTGTTTTTACCATTTCCACAATTTAGTTCTCAACCAATGGTTAAAACAAAAGCTTGTAAAAACTTGGGGTATGATGGTATCATGCCCAAGAACCTTTTTTCTGAATATGGTACTGTACAATTTGGTTCTTCTAATGTTCTCTGGAATAGTAATGGTCACACAAGAAGGCAATCAAATGATTCTGCATCAGAACTCAATGAATATTTGGACAAGGATAAAGTTGCGAGGTTTGGTGAAGATTGCTGTACCAAAATAAATTCTCAATTTGAAGTAAATCAATCCATTGAATTTGGCTCCATCAGAAGAACTGTTGTTGACAGTGGTAGTTGTACTCCGGTTGTCAGTGGAAAGATATATGAATCAAGGTTTGAATCAGATACATCTGTGGGTGCAAATGCTTTGCAAGGATCAAATAATGTATCTTTGTTTGGACGAAACAATCACTTGATTTTGGGGACATCTACTCCATTTGAAGGAAATTTGAAGAGCCTTCCCTATCTTGTTTCAAGCTCTACGCAAAATCAGAGTCCCACTCTACTGCAAAGGGGTATTAATATGGATACTTACATGTCTGATGAAAATATGAAGTTGCTTGCATTGACACAGACGCTGGAGTTATCTAAGCAACAACAAACATTGTATTTTCCTGATATGAATCTAAAGCAAGGGAAATCAATTATTGCAAAACCGCAAAACGATATATACAAGGCTTCAGTATCTGAGCAGGGTTCTTCTGGTGCACCATTGAAATTTCCCCAAAATAGGGGTACTTGTTGGAATCTTGAGAATACTGATGGTTTGAACAGACATTGTGATCTCTCTGCCTTAGCACCAATACCTTTACAATCTATAGAAAAGAAATCACAATGTAAATATTCTTATGATCATCAAAATGATGGGCCGACTTTGAGCCTTGGAATGAACAATACCAGATCAAGTGAAAAATGCTCTAAGCAACCGTCAAATATACATTTTGTAGGCAAATATGCTAGTGCTGCTTGGGAAAACTGTTGCAGAAACAATGCTTGCACCAGAATTCGAACCTCTCGGGGTATTGTAAAAGGAAAACCTGCAGATGCCAATGTTGTTACCTCTTGGAAGATAGCTTCAGAGTGTAGTAGAGATCAGAATGCTTCGATGAATGGAAATCTCTACTTTGAGCTAAGTGCAACTTCAGATGGTCACGGCACCGTAAAAAGTGGCTCTCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAACCATTATGTGATGCAACACTTTCAGATCAGATAGCTACTGTATTAGATTGGGAAAGACAAGAAAGTCTCCAAGTGGAAAACATTTCTGCCAAATGTTTGAAAAAAGTTATTGATAGGGAAGATTTGTTGAAAAAACAGGAAAATTTTAATGATTCTTCTGGATGTAATGCTCCTGTTGTTTCTCAGGCCTCTGTGACGGAGGTGAACAAGGTTGATTGTTGTCCTGTAGATGCTACAGATGCTGGTTGTATTGAGAACCTTGTGCTTGATGAGGGGTCAGGAATTGATAAAGGCATGTCATCTTTTTTGGCTGATAGTGAAAAAAGTGCCGAGTATGCAGGCTCAACCAGTGGGAGCGACTTGAAAAAAGGTTATCTGAGAGTCTTAAACGATCAATCATGCCAGAGTCTCATTGATGATATTAAACTGTTAGATTCTTTGATTTGGAAGAAAAGGCAGGACCAAAATCAAACAATAGTTAGTGCTAATTGTGCAGCCATTCAATCTCTAAAAGTCAAGAAGGGCTTCAAAGGAAAAAAGCAAAAGAGAAATGAGGCAAGAGTTCTGGATGCTTCATTGGATAACCAGAAAGGAGAAAGTACTGGAGCTTTTGATTCCCCTTCTAGTTTATGTGAAGAAATGCAGTTGTACTTTTCATCTAGTCAGCAAAGATCATCTGACAAGGCTTCTATTGTTCAACCTAATACTAATCATAATCTTAGACCTTCTTCATTTTCATCCAAATTTCTCTCTTGTAAGAATCATCTAAACAAGCATCGCTGCAATGAAGATAGCTATGAGTCAGAATCAAATTCTGATGCTGAGTTTCACTTGGTACATGGTGTTTCTAGAATGAAGAAATTAAGGAGGGATTTCACTTCTGATTGCTTTGGGCATTTTCAAACACAAGAACCATCCTATGAGGAACCTAAAAGTGCTATGCAGATGTCATCCTCTAGCATAAAAGGAAATGCTCATAGAATCAAAAGACCAGTAGTGTGTGGAAAATATGGGGAAATATCTAGTGAATTATCAATTACAGAAGTACCAGAACCAGCAAAACTTGTCTTTCTAAGCAAGGTCCTTAAAACTTCGGAAAGATGTATGGTCCCTACAATTGAAACACCTAAACTAACCACAAAAAAGAAATGGAGGAGATTGGACTTTGGAACATGTTTGGATTATAGCTGTTTTAAATCTGGTTTAAAAGCTAAGAAAGATAATGAATCCAAAGATACAGTAATGCATGATGAAACAAACTCTGATGTGTCTATGGAAGGTTTTGAGAGAGTCAGCAAGAAAAATGTTATTTACAAAGGGAAGAGAGATACCAAAGAAAGGCATGGTGATATTGTAAGTCGAGCTGATGCTCCATGGAAGGTGAAGAGTAGAAAAATTCGAAAAGAGCGCAGCATTAATGAAATCACGGCTGAAGAAACCCAAATGGAGAATACTTTGAAGTATGCTGAAGGTCCTGAGCATGGTTTGTACACAAGAAGTAAAATCCCTGTTCAAGAACACGCAAATATATCCATCATTAATGCAGATTCTTTCTGCTGTGTCTGTCAACTCTCAAGCAATGATGAAGGCAACAATATATTGGAGTGTAGTAGATGTCCAATTAAAGTGCATCAGGCTTGCTATGGTATCTCAGCATTACCTAAAAGAGGTCGTTGGTATTGTAGACCATGCCGCACAAAGTCAATAGATATGGCCTGTGTCCTATGTGGTTATGGAGACGGAGCGATGACTGGAGCATTATCGAGTCGCTTAATAGTAAAAAGCCTCCTAAAAGTGTGGAGCTTTGAGAAAGACAGGATGGCTATACGTGGAACTTCACAACAAGTTTATGGAAAGAAAGTAGCAGCATTTCATTCCTCAAAAACTGGATGTGGAGTTGACCAAGAACTTATTTTAAGGCCTGAAAATATTGGCACATCATCAACAGATCTGGCGAATGCTGAAATTTCTACTAATAATGTGGTACATACCCCGTGCACCGCTACTAATTTGAAGGTACATAACAGCATAACAGCAGGAGTTCTTGATTCAACTGTTAAGCAGTGGGTTCATATGGTTTGTGGACTTTGGACTCCTGGAACAAGATGCCCCAGTCGCCGAACCATGAGTGCTTTTGATGTATCTGGTGTTTCACGTCCAAAAGCTGATGAGGTGTGTTCAATTTGCAATCGATGGGGTGGTTCGTGCATAAAGTGCAGGGTTGTTGGTTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTATTGCAAAATGAAACTGAGGGAGTTAATGACGAGAAAGTTGGATTTTATGGAAGATGTGTGCTTCATGGTATTGGCCCTAACTGCCAGTCTACATACGACCCTACTGATGAGATGGACAATCGGGAGGAAAAGGAATTCACCTGTGCTAGGGCAGAGGGTTACAAGGGCCATGGATGGGATGGTATCCAAAATAATCATCGGGGTGGATTCCTTGTACCGGATAAGAAGATAGAAGCTTGGGATCGCATAAGTAAGCAGAAATTGCGTTCACAAGGAATTCCAAAATTTCTAGATTCAGATATTATGAAGGATTGCCAGAAAGAGTATGCACATTACAAACAAGTGAAAGGCTGGAAACATCTTGTTGTATACAAATCTGGGATACACGGCCTTGGTCTTTATACTTCTCAGTCCATATCTCGGGGTAGAATGGTTGTAGAGTATGTCGGTGAAATTGTGCGAAAACATGTGTCTGATAAAAGAGAAAATGAATACCAATCTGGAAGGAAACTTCAGTACAAAAGTGCCTGCTACTTCTTTAAGATAGACGACGAATATGTAATTGATGCCACAAGGAAGGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAGGGCATGCGAAGAAGGTGGTCTTCTTTGCGGAGAGGGACATATCTTCCGGTGAAGAGATTACTTATGATTACCATTTCAACCGCGAAGAAGAAGGAAAGAAACTTCCATGTTACTGCAATTCAAAAAACTGCAAGCGCTTTATGAATTAA 5016 0.3923 MESNAFASDMSKSDLSHILNSAAATLRKQPITNQDGFIIPLKGLNAFTQNSQYDQGKTKLMESNVAICTHSSNFFGAQLDDGCQSIPPFLDTLKRNGYLSIIQSTQIPTSHRKDLECIKKENVKSSLLGKDATSSNIELRLGQPPQAGNPVSSFAESPMFTFASSPKLHSLKQMTNNLSRKVELQKNFSHIAGTIEMREEPTLLKPPNYMSGFSNISGAVTASSQTDYVAKSSLFLPFPQFSSQPMVKTKACKNLGYDGIMPKNLFSEYGTVQFGSSNVLWNSNGHTRRQSNDSASELNEYLDKDKVARFGEDCCTKINSQFEVNQSIEFGSIRRTVVDSGSCTPVVSGKIYESRFESDTSVGANALQGSNNVSLFGRNNHLILGTSTPFEGNLKSLPYLVSSSTQNQSPTLLQRGINMDTYMSDENMKLLALTQTLELSKQQQTLYFPDMNLKQGKSIIAKPQNDIYKASVSEQGSSGAPLKFPQNRGTCWNLENTDGLNRHCDLSALAPIPLQSIEKKSQCKYSYDHQNDGPTLSLGMNNTRSSEKCSKQPSNIHFVGKYASAAWENCCRNNACTRIRTSRGIVKGKPADANVVTSWKIASECSRDQNASMNGNLYFELSATSDGHGTVKSGSHTPQWRDVPSKVRKPLCDATLSDQIATVLDWERQESLQVENISAKCLKKVIDREDLLKKQENFNDSSGCNAPVVSQASVTEVNKVDCCPVDATDAGCIENLVLDEGSGIDKGMSSFLADSEKSAEYAGSTSGSDLKKGYLRVLNDQSCQSLIDDIKLLDSLIWKKRQDQNQTIVSANCAAIQSLKVKKGFKGKKQKRNEARVLDASLDNQKGESTGAFDSPSSLCEEMQLYFSSSQQRSSDKASIVQPNTNHNLRPSSFSSKFLSCKNHLNKHRCNEDSYESESNSDAEFHLVHGVSRMKKLRRDFTSDCFGHFQTQEPSYEEPKSAMQMSSSSIKGNAHRIKRPVVCGKYGEISSELSITEVPEPAKLVFLSKVLKTSERCMVPTIETPKLTTKKKWRRLDFGTCLDYSCFKSGLKAKKDNESKDTVMHDETNSDVSMEGFERVSKKNVIYKGKRDTKERHGDIVSRADAPWKVKSRKIRKERSINEITAEETQMENTLKYAEGPEHGLYTRSKIPVQEHANISIINADSFCCVCQLSSNDEGNNILECSRCPIKVHQACYGISALPKRGRWYCRPCRTKSIDMACVLCGYGDGAMTGALSSRLIVKSLLKVWSFEKDRMAIRGTSQQVYGKKVAAFHSSKTGCGVDQELILRPENIGTSSTDLANAEISTNNVVHTPCTATNLKVHNSITAGVLDSTVKQWVHMVCGLWTPGTRCPSRRTMSAFDVSGVSRPKADEVCSICNRWGGSCIKCRVVGCSVKFHPWCAHQKNLLQNETEGVNDEKVGFYGRCVLHGIGPNCQSTYDPTDEMDNREEKEFTCARAEGYKGHGWDGIQNNHRGGFLVPDKKIEAWDRISKQKLRSQGIPKFLDSDIMKDCQKEYAHYKQVKGWKHLVVYKSGIHGLGLYTSQSISRGRMVVEYVGEIVRKHVSDKRENEYQSGRKLQYKSACYFFKIDDEYVIDATRKGGIARFVNHSCLPNCVAKVITVGHAKKVVFFAERDISSGEEITYDYHFNREEEGKKLPCYCNSKNCKRFMN 1671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03200 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1147 1222 IPR013083 -
Car04g03200 1671 ProSitePatterns Zinc finger PHD-type signature. 1168 1213 IPR019786 -
Car04g03200 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1311 1429 IPR013083 -
Car04g03200 1671 ProSiteProfiles Post-SET domain profile. 1655 1671 IPR003616 -
Car04g03200 1671 ProSiteProfiles Extended PHD (ePHD) domain profile. 1316 1430 IPR034732 -
Car04g03200 1671 ProSiteProfiles Zinc finger PHD-type profile. 1165 1216 IPR019787 -
Car04g03200 1671 SMART PHD_3 1167 1214 IPR001965 -
Car04g03200 1671 SMART PHD_3 1374 1430 IPR001965 -
Car04g03200 1671 SMART set_7 1526 1653 IPR001214 GO:0005515
Car04g03200 1671 CDD SET_SETD1-like 1528 1667 - -
Car04g03200 1671 Pfam PHD-zinc-finger like domain 1334 1411 - -
Car04g03200 1671 CDD ePHD 1337 1420 - -
Car04g03200 1671 Gene3D SET domain 1484 1671 IPR046341 -
Car04g03200 1671 SUPERFAMILY FYVE/PHD zinc finger 1165 1216 IPR011011 -
Car04g03200 1671 SUPERFAMILY SET domain 1520 1667 IPR046341 -
Car04g03200 1671 Pfam SET domain 1537 1646 IPR001214 GO:0005515
Car04g03200 1671 SMART PostSET_3 1655 1671 IPR003616 -
Car04g03200 1671 ProSiteProfiles SET domain profile. 1526 1647 IPR001214 GO:0005515
Car04g03200 1671 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 43 1671 - -
Car04g03200 1671 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 43 1671 - -
Car04g03200 1671 Pfam PHD-finger 1180 1214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03200 Car-Chr4 60359216 60371328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03200 1528 1671 C2H2 Transcription Factor Family AT2G23740 33.129 7.69e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g03200 SET 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03200 - - cam:101492875 3371.64