Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03182 ATGGTACAATCAAACAAGTTCAGGGGAGTAAGACAGCGTCAGTGGGGCTCATGGGTGTCAGAAATTCGTCATCCAATATTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCTGAGGCTGCAGCAAGGGCATATGATCAAGCAGCAATTTTGATGAGTGGAGTGTGGAAAAAAGGAGTAGGTCAACATTCTGACTCTAATTGGATCATAAGGGTGGAGCTTGGAAAGAATAAACATATTGAAGAGGGTCATGATGAATATTATTATAATCATGTGTCATCATCATTAGAAGGATCAATACCTAACAATAGTAATGTTGGTGGTGATCATGTTGGAGAAAATCATGAAGAGGACATTGCTGCCATGGAGATGATCGAAGAACTACTTAATTTAAACTAA 402 0.3955 MVQSNKFRGVRQRQWGSWVSEIRHPILKRRVWLGTFETAEAAARAYDQAAILMSGVWKKGVGQHSDSNWIIRVELGKNKHIEEGHDEYYYNHVSSSLEGSIPNNSNVGGDHVGENHEEDIAAMEMIEELLNLN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03182 133 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 61 133 - -
Car04g03182 133 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 56 - -
Car04g03182 133 CDD AP2 6 40 IPR001471 GO:0003700|GO:0006355
Car04g03182 133 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Car04g03182 133 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Car04g03182 133 SUPERFAMILY DNA-binding domain 6 56 IPR016177 GO:0003677
Car04g03182 133 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Car04g03182 133 ProSiteProfiles AP2/ERF domain profile. 6 70 IPR001471 GO:0003700|GO:0006355
Car04g03182 133 Pfam AP2 domain 6 53 IPR001471 GO:0003700|GO:0006355
Car04g03182 133 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 61 133 - -
Car04g03182 133 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 56 - -
Car04g03182 133 Gene3D AP2/ERF domain 5 58 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03182 Car-Chr4 60137888 60139310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03182 1 55 AP2-EREBP Transcription Factor Family AT5G25390 87.273 1.82e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g03182 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03182 - - qsu:111994332 97.8265