Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03179 ATGGGTGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTCGACTACGAAGAGGAGGACGACAAGGCTCCTGATTCTGCTGGAACTAAAGTTAATGGTGAATCTGGAAAAAAGGGCTACGTTGGGATCCACAGTTCAGGATTTAGAGACTTTCTTCTAAAGCCAGAGCTTCTTCGGGCGATTGTCGACTCTGGTTTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTGATCTGCCAAGCAAAATCTGGAATGGGAAAAACTGCTGTTTTTGTTCTTTCAACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCTCTTGTTCTGTGTCATACAAGGGAATTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTGTCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAATATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGTACACCTGGAAGAATACTAGCATTGGCCAGGGACAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAAAGACGTGCAAGATATTTTCAAAATGACTCCCCATGACAAACAAGTTATGATGTTTTCTGCAACCCTCAGCAAGGAAATTCGCCCAGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGATGAAGCCAAATTGACCCTTCATGGTCTCGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCATTGGACTTCAATCAAGTTGTGATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGATAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGCTGAAGCGTTATAAAGGGTTCAAGGAGGGGCATACAAGGATTCTTGTCGCAACAGATTTGGTTGGCAGGGGAATAGACATTGAACGTGTGAATATAGTAATAAACTATGACATGCCTGACGGTGCAGACACATACTTGCACAGGGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAATTACGTTTGTTTCATGTTCAAGTGATGTGGATGTTCTCAACAATGTTCAGTCCCGTTTTGAGGTGGATATAAAACAGCTTCCCGAGCAGATTGATACATCAACCTACATGCCATCATAA 1284 0.4245 MGETKDEAYEEELLDYEEEDDKAPDSAGTKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLSDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDGADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03179 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Car04g03179 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Car04g03179 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Car04g03179 427 Gene3D - 259 426 IPR027417 -
Car04g03179 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Car04g03179 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Car04g03179 427 Gene3D - 42 258 IPR027417 -
Car04g03179 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Car04g03179 427 MobiDBLite consensus disorder prediction 1 22 - -
Car04g03179 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Car04g03179 427 CDD SF2_C_DEAD 263 392 - -
Car04g03179 427 CDD DEADc_DDX39 45 252 - -
Car04g03179 427 SMART ultradead3 65 266 IPR014001 -
Car04g03179 427 MobiDBLite consensus disorder prediction 1 34 - -
Car04g03179 427 SMART helicmild6 302 383 IPR001650 -
Car04g03179 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 396 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03179 Car-Chr4 60104945 60110918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03179 1 427 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03179 K12812 - gmx:100808957 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03179 04 60104945 60110918 Car04g03179 04 60104945 60110918 ECH
Car05g02964 05 74582877 74588648 Car04g03179 04 60104945 60110918 ECH
Car04g03179 04 60104945 60110918 Car05g02964 05 74582877 74588648 PCT