Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03171 ATGGATTCTCCAGAACCTTCTAACATCAAAACCActtcttcttcttctctctccactctcaatgcttcttcttctCAATCCCCTCAACTTCAAGAATCTCCCTTTTTAAGATTTGTCAACACTCTATCTCCAATAAAGCCCATCAAGGCTACACATGTCGTACATGGTTTTCTTGGACTCAATTCTCCACCTCTTGTTTTCAAGTCGCCGCGCATTAGTGGTCTCCGTGAAACACAATACTTGGAAAGACCTCAAGGCACCCATTTATCCGATGGTGGAATATCTCAAAGTGACATTGGAGGCAACAGTATTGTTGAAGCTCGTGGTCGTTTGGAGAAATTGAAAACTCAACAGCCACTTTTAGAGGGTTTTATAACAGACACTCCAAAGGATTTTGACATCAACATTGATGCGAATACCCAAAGCTGCAGTCCTCCACCATCTGTTGATAAATATTTGGCCGATCCTGAGGATGATCAAATGTATTCAGTCAACCCAGAAATGGAACAGTCTACTGATGCAGCAGTTGAGTCATCACTAACTGAGTCAAAGAAAGTTATATTAAAATTTGATAAGGAACATGGTCCTAGTAACAGAGCAGAAGAACTTTTGCCTTTGTCAGAGGAATCTAATATGGTTCATCAAGAAAGGGCAGCATATGTTGAAGAACCTGCAAACGTAGAAGGTGAAAGAAATGGTGCTGAATGGATTTCTCAAGAGCACACAGTCTTAGACTCCAGTTCAGGTGCAGATGTTTTTGATCAACATCATTATCATGATTCACATCCCCAGTGTGCAGGAAATGATCAACGGCATCATAGTGACTGTACGCCTCAATTGATGCCTGATCATAACCAGGTTGTTAAAGAATTCGAAAATTGCAATGAGATGGTGTCAACCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGGCTAGTTTAAAGTATCATAGCATCCGTAGACGCTGCCTACAATTTGAGGAAGCTGCTTCCATTGATCTTGGAGGTACCAAGTCTCATGTGAAATCGAATGCAACTTCAAGCAACATGAAAATGGTTCCTGTGACAGGTTCCAAACCACCAGGAATTGGGTTGCATTTAAATAGCATTATAAATGCAATGCCAGCTAGTGGTGCTTCAACTACAGCTGTGAGATTATCTAATGGTTTACAGGGGATAAAATCCAAACCTACTATAAGTTTGCATAAAGTGGAAAACGTGACACAATCCTCAATTTTGTCCAATATTGATGGTCAGTCAGTTATTGATGCTAGAAATGAGATCCATGAAACTGATGCTTCGGTAGCTGCAGATTCTTTCATTTCCGAGTCTTCTATCTTGACAGAACCTATCGCCCTATATCCGGAAAATGCACATGATAAGAGGAGACTAAGTCCTACAGATACCGAAAATACTGAGGAATTCAACCATCCTAGCACCTCCAAGAAAAAGAAGAAAACAATTACTGATGATGGCGGTGGTTCTAAGGGGTGCCACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGCGCCGGAATCTACTGTGGCGAAGGTTGTGCTTGCCAAAGTTGTGGTAATAGAATAGAATTTGAGGAGAAAGTTGTTGAGACGAAGCAACATATTGAATCACGTAATCCAAATGCATTTGCTCCCAAGATTGTACAGTGTGTAGCTGATGTTCCATTAAATAATATGGAAGATGTGAGTATGACGACACCGGCATCAGCTAGGCACAAAAGAGGTTGCAACTGCAAAAGGTCAAAGTGCACTAAAAAATATTGTGAATGTTTTCAGGCTAATGTTGGATGCTCAAGTGGATGCCGATGTGACGGATGTAAGAATGTCTTTGGCAAGAAAGAAGATTATGTGGCAATTGAACATACTTCGAGCATAGAAACGGAGAGCAGCATTATTGAAGAAGGGTTGGATGACAAACTGTACAATAGACAGAAAATGGTGGTAAGCAGGACAGGCTTGTTACGAGCACCTAATCACCTCTCACCTCTAACACCATCGCTGCAATGCTCCGACCAAGGCAAGCAAGCTGCAAAGTCCAGACTTGCTTCTGCAAATTGGACTAAATCTTCCAAAAAATCACGCAGCAGTCTTGCACATACGGCGAGGAATGATTCTCAAAAGAATGCACCTCCATGTGTTTCGCTTAAAGAAAATGAGTGGACAGATATTGTACCATACCAACCGTCCAATGTATGTGGCATTCGCCAGTTATCTGGGGGCTCTCTTCGTTGGCACAGTAGTTCACCAATTACCCCAAGCGCTAACTTTGGTGACGAATCCAATGGCAAGCTCTTTGACATTCTAGAAGATGAAACACCTGATGTATTGAAGGAAACATCAACTCCCATCAAGTCCGTGAAAGCCAATTCTCCAATCCATAAAAGAGTTTCTCCTCCACAGAGTCATCTACTTCGGATTGGATCAAGCTCTTCAGGAGGTGGCTTGAGAAGTGGCAGAAAATTTATATTGCAATCTGTTCCTTCTTTCCCGCCGTTGACCCCTTGTGCTGATTCCAAGGTCAATTGCAATAGCAATGAGGATTCGAGTAACAATGCAAAGAAAGTGGCATAA 2610 0.4092 MDSPEPSNIKTTSSSSLSTLNASSSQSPQLQESPFLRFVNTLSPIKPIKATHVVHGFLGLNSPPLVFKSPRISGLRETQYLERPQGTHLSDGGISQSDIGGNSIVEARGRLEKLKTQQPLLEGFITDTPKDFDINIDANTQSCSPPPSVDKYLADPEDDQMYSVNPEMEQSTDAAVESSLTESKKVILKFDKEHGPSNRAEELLPLSEESNMVHQERAAYVEEPANVEGERNGAEWISQEHTVLDSSSGADVFDQHHYHDSHPQCAGNDQRHHSDCTPQLMPDHNQVVKEFENCNEMVSTSQVNSENIPQDGSEASLKYHSIRRRCLQFEEAASIDLGGTKSHVKSNATSSNMKMVPVTGSKPPGIGLHLNSIINAMPASGASTTAVRLSNGLQGIKSKPTISLHKVENVTQSSILSNIDGQSVIDARNEIHETDASVAADSFISESSILTEPIALYPENAHDKRRLSPTDTENTEEFNHPSTSKKKKKTITDDGGGSKGCHCKKSKCLKLYCDCFGAGIYCGEGCACQSCGNRIEFEEKVVETKQHIESRNPNAFAPKIVQCVADVPLNNMEDVSMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSSGCRCDGCKNVFGKKEDYVAIEHTSSIETESSIIEEGLDDKLYNRQKMVVSRTGLLRAPNHLSPLTPSLQCSDQGKQAAKSRLASANWTKSSKKSRSSLAHTARNDSQKNAPPCVSLKENEWTDIVPYQPSNVCGIRQLSGGSLRWHSSSPITPSANFGDESNGKLFDILEDETPDVLKETSTPIKSVKANSPIHKRVSPPQSHLLRIGSSSSGGGLRSGRKFILQSVPSFPPLTPCADSKVNCNSNEDSSNNAKKVA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03171 869 MobiDBLite consensus disorder prediction 842 869 - -
Car04g03171 869 MobiDBLite consensus disorder prediction 804 830 - -
Car04g03171 869 MobiDBLite consensus disorder prediction 693 725 - -
Car04g03171 869 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 856 IPR044522 GO:0003700
Car04g03171 869 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 856 - -
Car04g03171 869 MobiDBLite consensus disorder prediction 850 869 - -
Car04g03171 869 ProSiteProfiles CRC domain profile. 497 624 IPR005172 -
Car04g03171 869 SMART CXC_2 496 537 IPR033467 -
Car04g03171 869 SMART CXC_2 584 625 IPR033467 -
Car04g03171 869 MobiDBLite consensus disorder prediction 460 501 - -
Car04g03171 869 MobiDBLite consensus disorder prediction 1 28 - -
Car04g03171 869 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 587 621 IPR005172 -
Car04g03171 869 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 499 534 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03171 Car-Chr4 59999297 60006336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03171 308 847 CPP Transcription Factor Family AT3G22780 32.616 3.93e-57 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Car04g03171 TCR 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03171 K21776 - gmx:547664 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03171 04 59999297 60006336 Car04g03171 04 59999297 60006336 ECH
Car04g03171 04 59999297 60006336 Car05g02448 05 69553118 69555301 PCT