Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03165 ATGATGAAGATGTTTGGTTTAATGTCTCGTGGTCGTCacaatgagaatgacattgacaatgacaatgacaaCGAAAATCAAAACAAAGAAGAGGCTGGTACCAGCCAATATAGTCTCACCGGAATCATTCTTCCATCGCTCGGCGCCACCAACTCCATCGGTGGCAGCCGGAAACATCTTCGCGGTCACATCATCTCCCCAAACAACTATACGTATCGACAATGGTGCAGCTTTTTGATGATATGGGTTTTGTACACAGCATGGGTGTGTCCTTTTGAATTTGGGTTTCTTGAGAAATCAAAGGGTGCACTTGCTATAGTAGACAACATTGTGAATACATTGTTTCTGGTTGACATTATTATAACCTTCTTTGTTGCCTACATTGACAAATCAAGTTGCCTACTCGTCGACGTGCCGAGTAAAATTGCTACCAGATATTTGTCTTCCTGGTTCATACTTGATATGGTCTCTGTCATTCCTTATGAGCTTATTCATGCTGTATTGCCATCTCCATTCAATGCATATGGTTTGTTAACTATTTTTCGCCTTTGGCGCCTTCGTAGAGCTGGTGAATTGTTTTCAAGGTTAGAAAAGGATAGGAAATTTAACTACTTTACGGTGCGATGTATAAAACTTATATGTGTAACACTATTTTCGGTGCATGTCGCAGCTTGCTTTTTCTATTTTCTTGCTAAATCACATGGCCATAAAAAAGTTACATGGCTTTCACTTGTCTCAAATGGTGACAGCCTAAGTTTGTGGGATGGTTATGTAACATCAATTTATTGGGCCATAGTGACTCTTTCATCAGTTGGTTATGGAGATTTGCATCCTATAAATGTTGGTGAAATGATATTTGACATTTTCTATATGCTATTCAATTTTGGACTCACTGCATATCTTATAGGAAACATGACCAATTTGGTTGTTCATTGGACAGATAAAACTAAGAGATATCGAGATACTGTCCAAGCTGCATCAAATTTCGCTCACAGGAATCGGTTACCGGTTCGTTTACAAGAACAGATATTTGCTCATTTTCATATGAAGTACATAACAAATTTAGAAGGATTGGAGCAACAAGAGATAATTGATTCGCTTCCGAAAGCCATTCAGTCAAGCATTGCGCACTATCGATTCTTCGAACATATCAAAAAAGTATACTTGTTTCGAGGTGTGTCGGATGACCTACTATTTCAACTGGTGACAGAGGTTAAGGCTGAGTTTTTTCCTCCAAAAGAAGAAGTGATCTTGCAGAATGAAACACCAACAGATTTTTATATATTGGTTAATGGAGCTGCTGATATTATCTTTCATAGGGATGGAGTAGACAAGGTTCTTGATGAAACATTTACAGATAGAGTTTTTGGAGAAATAGGAGTCTTATGTTATAGGCCACAACTTTATACGGTTCGTACCAAGCGATTAAGCCAGACTTTGCGTTTGAGTCGAACAACATTTCTAAACCTTGTTCATAACAATGTTGGAGATGGAACAATAATCATGAACAATTTTCTTCAGCATTTGCAAAAATCAAATGATTCAACAATGGTAGGAGTAATGACTGACATAGAGACAATGTTGGCTAAAGGCAAAATGGATTTGCCTATAAGTTTAATATTTGCAGCTTCCAAAAGTGATGATATTTTGTTGCATCAATTGCTGAAGAAGGGTTCAGATCCAAATGAAATAGATAGTAAAACTGGAAAGACACCATTGCATATTGCAGCTTCTAAAGGAAATGATCATTGTGTGGTTTTGCTTCTTGAATTTGGTGCTGATCCCAACATTCAAGATTCAAATGGAATTATACCACTATGGGAATCAATTATGGGTAAGCATGAATTAGTAACAAAACTACTTATGGACAATGGTGGAGACATATCATCAGCTGATGTAGGTCGTTTAGCATGCTATGCTGTTGAGAAAAATGAAATAAAATTACTCAAAAGTATTGTTGAATGTGGTGGTGATGTGAATAAGCCCACAAATAAGGGAACCACAGCACTTCATGCTGCTGTTTGTGATGGAAATGTTGAAATGGTTAAATTCCTTTTAGAACAAGGTGCTGATATTGATAAACAAGATGATTTTGGTTGGACTCCAAGAGCTTATGCAGAACATCAATGTCATGAAGAGATACAAAATATTTTTAAAAAACTTGGAAATGAGGATAATTTGTCATATGTTATTCCTCCAATGCCAAATAAAAATAATAATGGAGGGGGTTTTATTGGAAAATGTCCAAGTGAACCTTCTATGGTAGCTATGCCTCAAGGTAGTGGTAACTTGCCACCTAATCAAGAGTTGACATGGTTGGATACTCATAAGAGAAGAAGGAGTAACCCTTTTCATAATTCATTATTTGGAATGTTGTCAGCTGCTACTAGAGGTAAAGATAAAATTGAATCCTCTACATCTCAAAGCAGTTTCACCACATCAACAAGTATGAGTGAATTACCAATTAGAGTAATGCTTAGTTGTCAAGGAAAAGATGAACATGCTAAGAAACTTGTATTTCTACCAAATTCTCTTCAAGAGTTGCTACATCTTGGTGCTAAAAAGTTTGACTTTTCTCCCACTAAAATTTTGACTGAAGATGGAGCTGAAGTTGAAGACATAAGCTTGATAAGAGAGGGTGATACTCTTATTCTTGCATTAGACTAA 2667 0.3637 MMKMFGLMSRGRHNENDIDNDNDNENQNKEEAGTSQYSLTGIILPSLGATNSIGGSRKHLRGHIISPNNYTYRQWCSFLMIWVLYTAWVCPFEFGFLEKSKGALAIVDNIVNTLFLVDIIITFFVAYIDKSSCLLVDVPSKIATRYLSSWFILDMVSVIPYELIHAVLPSPFNAYGLLTIFRLWRLRRAGELFSRLEKDRKFNYFTVRCIKLICVTLFSVHVAACFFYFLAKSHGHKKVTWLSLVSNGDSLSLWDGYVTSIYWAIVTLSSVGYGDLHPINVGEMIFDIFYMLFNFGLTAYLIGNMTNLVVHWTDKTKRYRDTVQAASNFAHRNRLPVRLQEQIFAHFHMKYITNLEGLEQQEIIDSLPKAIQSSIAHYRFFEHIKKVYLFRGVSDDLLFQLVTEVKAEFFPPKEEVILQNETPTDFYILVNGAADIIFHRDGVDKVLDETFTDRVFGEIGVLCYRPQLYTVRTKRLSQTLRLSRTTFLNLVHNNVGDGTIIMNNFLQHLQKSNDSTMVGVMTDIETMLAKGKMDLPISLIFAASKSDDILLHQLLKKGSDPNEIDSKTGKTPLHIAASKGNDHCVVLLLEFGADPNIQDSNGIIPLWESIMGKHELVTKLLMDNGGDISSADVGRLACYAVEKNEIKLLKSIVECGGDVNKPTNKGTTALHAAVCDGNVEMVKFLLEQGADIDKQDDFGWTPRAYAEHQCHEEIQNIFKKLGNEDNLSYVIPPMPNKNNNGGGFIGKCPSEPSMVAMPQGSGNLPPNQELTWLDTHKRRRSNPFHNSLFGMLSAATRGKDKIESSTSQSSFTTSTSMSELPIRVMLSCQGKDEHAKKLVFLPNSLQELLHLGAKKFDFSPTKILTEDGAEVEDISLIREGDTLILALD 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03165 888 ProSiteProfiles Ankyrin repeat region circular profile. 665 697 - -
Car04g03165 888 SUPERFAMILY Ankyrin repeat 538 722 IPR036770 -
Car04g03165 888 SMART cnmp_10 389 506 IPR000595 -
Car04g03165 888 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Car04g03165 888 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 8 886 - -
Car04g03165 888 SUPERFAMILY Voltage-gated potassium channels 69 310 - -
Car04g03165 888 Pfam Ankyrin repeats (3 copies) 639 714 IPR002110 GO:0005515
Car04g03165 888 Pfam Ankyrin repeats (3 copies) 539 630 IPR002110 GO:0005515
Car04g03165 888 ProSiteProfiles cAMP/cGMP binding motif profile. 389 508 IPR000595 -
Car04g03165 888 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Car04g03165 888 Gene3D Jelly Rolls 356 518 IPR014710 -
Car04g03165 888 SMART ANK_2a 601 630 IPR002110 GO:0005515
Car04g03165 888 SMART ANK_2a 568 597 IPR002110 GO:0005515
Car04g03165 888 SMART ANK_2a 665 694 IPR002110 GO:0005515
Car04g03165 888 SMART ANK_2a 534 563 IPR002110 GO:0005515
Car04g03165 888 Pfam Ion transport protein 74 316 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car04g03165 888 Gene3D - 535 720 IPR036770 -
Car04g03165 888 MobiDBLite consensus disorder prediction 10 28 - -
Car04g03165 888 CDD CAP_ED 389 494 IPR000595 -
Car04g03165 888 ProSiteProfiles KHA domain profile. 823 888 IPR021789 -
Car04g03165 888 PANTHER POTASSIUM CHANNEL AKT1 8 886 IPR045319 GO:0005249|GO:0006813
Car04g03165 888 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Car04g03165 888 Gene3D - 72 310 - -
Car04g03165 888 PRINTS EAG/ELK/ERG potassium channel family signature 85 92 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car04g03165 888 PRINTS EAG/ELK/ERG potassium channel family signature 108 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car04g03165 888 PRINTS EAG/ELK/ERG potassium channel family signature 119 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car04g03165 888 PRINTS EAG/ELK/ERG potassium channel family signature 257 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car04g03165 888 PRINTS EAG/ELK/ERG potassium channel family signature 283 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car04g03165 888 PRINTS EAG/ELK/ERG potassium channel family signature 301 310 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car04g03165 888 Pfam KHA, dimerisation domain of potassium ion channel 823 885 IPR021789 -
Car04g03165 888 Pfam Cyclic nucleotide-binding domain 409 494 IPR000595 -
Car04g03165 888 PRINTS Ankyrin repeat signature 569 584 IPR002110 GO:0005515
Car04g03165 888 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515
Car04g03165 888 MobiDBLite consensus disorder prediction 1 29 - -
Car04g03165 888 SUPERFAMILY cAMP-binding domain-like 314 509 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03165 Car-Chr4 59910233 59916826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03165 19 888 Ion Channels AT2G25600 53.784 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03165 K21867 - gmx:100809960 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03165 04 59910233 59916826 Car04g03165 04 59910233 59916826 ECH
Car04g03165 04 59910233 59916826 Car05g02982 05 74737299 74742036 PCT