Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03158 ATGGAGAGTAATGAAGTATCAAGAGTTGATAGTTTAAGAAGAGCAAATAGTTCAAACATATGGAGGAACAATAGCATGGATGTTTTTTCAACATCTGAACGTGAAAATGATGAAGAAGCACTTAAATGGGCTGCTATTGAGAGACTTCCTACATATTTaagaattagaagaagcataatcaataatgaagaaggaaaaggaagagaagTTGATATCAAAAAGCTTGGATTGACAGAGAGAAAGATTCTTTTGGAAAGGCTTGTTAAAATTGCTGAAGAAGATAATGAGAAGTTCTTGTTGAAACTCAAGGAAAGAATGGATAGAGTTGGACTTGATATTCCAACAGTTGAAGTCAGATTTGAGCATATAAATGTGGAAGCACAAGTTTATGTTGGAGGCAGAGCTTTACCTTCATTGCTCAATTTCTTTGTTAATGTGTTAGAGGGATTCTTGAATTTTCTTCATATTCTTCCAAGTCCAAAGAAACCATTACATATCCTTCAGAATGTTAGTGGTATCATAAAGCCTCAAAGaatgacgttacttttgggaccacctggctctggaaagaccactttgcttttggcattggctggaaaacttgaaaaagatttgaaaCATTTTgggagagtaacatacaatggagaagtactagaagagtttgttccacaaaggacatcagcttatataagtcaacatgataatcacattggagaaatgactgttagagaaacactagctttctcggcaagatgtcaaggagttggacataattatgagatgttggctgaattactaagaagagagaaggaagcaaagattaaaccagatcctgatattgatgcctatatgaagGCAGCAGCACTAGAAGGACAGCAGGCGAGCGTCGTAACCGATTATATTCTGAAGATTTTGGGACTTGAAATCTGTGCTGATATTATGGTAGGAGATGGAATGATACGAGGTATCTCAGGAGGGCAGAAAAAGAGAGTCACAACAGgtgagatgctagttggaccaataagagtgttgttcatggatgagatatcaactggtttggatagttcaacaacttttcaaataatcagctcaatcagacaatcaatccatattctgaatggaaccgcacttgtttcattgctacaaccagcaccagaaacttatgaactatttgatgatataatacttctcacagatggacaaattgtgtatcaaggaccaagagaaaatgtacttgagttttttgaatcaatgggattcaagtgtcctgaaagaaaaggagttgctgatttcttacaagaagtgacatcaaggaaagatcaatggcaatattgggcaaataaagatgtaccttacagttttgttacagtcaaggattttgctgaagcctttcagatatttcacataggtcaaaaacttggagatgaactagccaatccttttgacaagtctaaatgccatgcaaatatcttgacaaaaaagaaatatggtgttaacatgaaggagcttctgaaggcttgtgctagcagagagtttttgcttatgaagagaaattcatttgtctacatattcaaaaTCACTCAACTTATTTATCTAGCTATCATGACAACAACATTGTTTCTAAGAACCAAGATGCATAAGAAAACTGTGgaggatggaggaacatacatgggagcactattcttcacagtcacagtagcaatgttcaatggaatatcagagctaaatatgacaatcatgaaacttcctgtgttttacaaacaaagagatcttcttttttatccttcatgggcttattcacttccaccatggatcctcaaaataccaataacactcattgaagttgccatttgggaagccatcacttactatgctattggttatgatccaaattttgtaagGTTTTTAAAACAGTATTTGATAATCCTATGCATTAATCAAATGGCATCTTCACTATTTCGGATGATGGCAGCATTAGGAAGGGATGTTATTGTAGCAAACACTGTTGGAGCATTTGCTTTATTAGTAGTTCTGGTTTTGGGAGGATTTGTGATTTCAAGAGAGGATGTACACAAATGGTTTCtatggggttattggtcctcaccactgatgtatggacagaatgctatagctgtgaatgaatttcttggacatagttggagAAAGGTTACTCGTAATTCCAATGAAACATTAGGAGTTTTGATACTAAAAACTCGCGGTTTTTTCCCACAAGCTTATTGGTATTGGATTGGTGTAGGAGCATTGACTGGTTATGTTCTTCTGTATAACTTTTTGTTCACATTAGCTTTACAATATCTCAGCCCATTCAGAAAGGATCAAGCAGGGTTATCTGAGGATAAATTGCTAGAGAGAGATGGTTCAACAGATGAAGAGTTTATTCAGTTACCTTCTCAAAAGAGCATTTCTGAAACAAGGATGGTAGATGAAGCAAGTAGAAGTGGAAGCAGGGGCATGGTTCTTCCTTTTCAACCTGTTTCCCTCACTTTTGATGAGATCAGATATGCTGTAGACATGCCACAGgaaatgaaaagtcaaggagttttcgaagatcgtctcgaacttttgaaaggtatcagtggtgcatttaggccgggagtactaacagctttgatgggtgtaagtggtgctggaaagactactctaatggatgttttagctggaaggaaaactggtggatatattgaaggaaacataacaatatctggttatccaaagaatcaaaaaacatttgctcgcatatcaggatattgcgaacaattcgatatccattcacctaatgttacagtttatgaatctttgctatattctgcatggcttcggctACCCCCGGAAGTTGATCAAGCTACCAGAAAGatgtttattgaggaagtcatggagcttgtagagcttaactcattaagagaagcacttgttggattgccaggcgagaatggactttcaaccgaacaacgcaagagacttacaattgcagttgaactcgtagccaatccgtcgataatattcatggacgaaccaacctccggccttgatgctagagctgctgcaattgtaatgagaacagtaaggaacaccgtggacacaggacgtaccgtcgtgtgcacgatccatcagccaagtattgatatattcgacgcctttgatgagcttctacttctgaaattgggaggtgaacaaatatatgctggtccattaggccgccactgttctcatttgattcaatactttgaggctattgaaggagttcctaagattaaagatggttataatcctgcaacttggatgttggaagttacatcagcaggatcagaagcaaatcttaaggtcaacttcactaatgtgtacagaaattcagaactatataggagaaacaaacaattgatccaagagctaagtatacatcctcaacattcaaaggatttatactttgatactcaatattcacaaaccatggtgacacaatgtaaagcttgtctatggaaacaacatttatcatattggaggaacacatcatacacagcagttaggctcctATTTACCACACTAATAGCTTTCTTGTTTGGTGTCATATTTTGGAACATTGGCTTGAAAAGGAGAaaggagcaagatctttttaatgcaatgggttcaatgtatgcttctgtcatctttattggagtacaaaatggtgcctcagtgcaacctataatagcagttgagagaacagtattttatagagaaagagctgctggaatgtattctgctttgccttatgcacttgcacaaGTTATTATAGAGCTTCCTCACATATTGGCTcaaacattgatatatggtattatagtatatgccatgatgggattggattggacaacatcaaaattcttatggtatcttttcttcatgtacttcacattcttgtactacactttctatggtatgatgaccatggccatcagtcccaacccacatgtggctgccatattgtccagtgctttctatgcaatatggagccttttctcaggctttgttattcccTTATCTagaataccaatatggtggaagtggtactattgggtttgtcctgttgcatggacattgtatggattggtggcttcacaatatggtgacaacatggacacacttgagaatggtcaaagggttgaagaatttgtgaagagttactttggttttgaacatgacttcctaggagtggttgcaattgttgtggctggtttctcagtgttgtttgcacttgtctttacctttagcatcaaagtattcaacttccaaaaaagatga 4296 0.1208 MESNEVSRVDSLRRANSSNIWRNNSMDVFSTSERENDEEALKWAAIERLPTYLRIRRSIINNEEGKGREVDIKKLGLTERKILLERLVKIAEEDNEKFLLKLKERMDRVGLDIPTVEVRFEHINVEAQVYVGGRALPSLLNFFVNVLEGFLNFLHILPSPKKPLHILQNVSGIIKPQRMTLLLGPPGSGKTTLLLALAGKLEKDLKHFGRVTYNGEVLEEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGVGHNYEMLAELLRREKEAKIKPDPDIDAYMKAAALEGQQASVVTDYILKILGLEICADIMVGDGMIRGISGGQKKRVTTGEMLVGPIRVLFMDEISTGLDSSTTFQIISSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWANKDVPYSFVTVKDFAEAFQIFHIGQKLGDELANPFDKSKCHANILTKKKYGVNMKELLKACASREFLLMKRNSFVYIFKITQLIYLAIMTTTLFLRTKMHKKTVEDGGTYMGALFFTVTVAMFNGISELNMTIMKLPVFYKQRDLLFYPSWAYSLPPWILKIPITLIEVAIWEAITYYAIGYDPNFVRFLKQYLIILCINQMASSLFRMMAALGRDVIVANTVGAFALLVVLVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRKVTRNSNETLGVLILKTRGFFPQAYWYWIGVGALTGYVLLYNFLFTLALQYLSPFRKDQAGLSEDKLLERDGSTDEEFIQLPSQKSISETRMVDEASRSGSRGMVLPFQPVSLTFDEIRYAVDMPQEMKSQGVFEDRLELLKGISGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKNQKTFARISGYCEQFDIHSPNVTVYESLLYSAWLRLPPEVDQATRKMFIEEVMELVELNSLREALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYAGPLGRHCSHLIQYFEAIEGVPKIKDGYNPATWMLEVTSAGSEANLKVNFTNVYRNSELYRRNKQLIQELSIHPQHSKDLYFDTQYSQTMVTQCKACLWKQHLSYWRNTSYTAVRLLFTTLIAFLFGVIFWNIGLKRRKEQDLFNAMGSMYASVIFIGVQNGASVQPIIAVERTVFYRERAAGMYSALPYALAQVIIELPHILAQTLIYGIIVYAMMGLDWTTSKFLWYLFFMYFTFLYYTFYGMMTMAISPNPHVAAILSSAFYAIWSLFSGFVIPLSRIPIWWKWYYWVCPVAWTLYGLVASQYGDNMDTLENGQRVEEFVKSYFGFEHDFLGVVAIVVAGFSVLFALVFTFSIKVFNFQKR 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03158 1431 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Car04g03158 1431 SMART AAA_5 871 1063 IPR003593 -
Car04g03158 1431 SMART AAA_5 176 401 IPR003593 -
Car04g03158 1431 CDD ABCG_PDR_domain2 831 1069 IPR034003 -
Car04g03158 1431 PANTHER ABC-2 AND PLANT PDR ABC-TYPE TRANSPORTER FAMILY PROTEIN 10 1431 - -
Car04g03158 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 424 IPR027417 -
Car04g03158 1431 Pfam ABC-transporter N-terminal 91 142 IPR029481 -
Car04g03158 1431 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1431 - -
Car04g03158 1431 Gene3D - 850 1082 IPR027417 -
Car04g03158 1431 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Car04g03158 1431 Pfam ABC-2 type transporter 1159 1373 IPR013525 GO:0016020|GO:0140359
Car04g03158 1431 CDD ABCG_PDR_domain1 149 406 IPR034001 -
Car04g03158 1431 Gene3D - 156 452 IPR027417 -
Car04g03158 1431 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 834 1086 IPR003439 GO:0005524
Car04g03158 1431 Pfam Plant PDR ABC transporter associated 720 781 IPR013581 -
Car04g03158 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 857 1071 IPR027417 -
Car04g03158 1431 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Car04g03158 1431 Pfam ABC transporter 862 1014 IPR003439 GO:0005524
Car04g03158 1431 Pfam ABC-2 type transporter 382 435 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03158 Car-Chr4 59842117 59855200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03158 872 1046 Calmodulin-binding Proteins AT2G36910 26.630 1.82e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03158 K08711 - gmx:100810505 2538.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03158 04 59842117 59855200 Car05g02988 05 74783072 74790784 PCT