Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03147 ATGGAGCGACCCGGGAGCTTCAGTGACAGTCAACATATTATAGAAATAGTTGGGAGTGTTGAGGCTTCCACATCCGCCTTGTCACATCATGAAGAAAGAATAAGTGGTGCACGGTTGCCTGTACCTCAGCCTTTGGTTTCAGCCTCAGGCGTATCAAGTGAATTGAATAATAGGAATTCTTCGTTCATAAGGCGGGCGGATTCTCGTCGGAATAGGAGTCCTGTTCATTCTGGGCTATGGATATCTATTGAGCTAGTTCTTTTATTAAGCCAGATTGTTGCATCTGTTGTTGTTTTGACATTGTCAAGGCATGAGCATCCGCATACCCCGTTGTTTCAATGGATAGTAGGTTATGCTTCTGGATGTTTTGCTACCCTCCCTCTTCTTTATTGGCGGTATTATCATCATAACCATATGCGAGAACAAGATTCAGCTCAGTCACGGCAAACATCTCCTCGAATTAGTGATCCTTCCGGGTCACTTCTTTCTATTTCCAGAAATAATGGAGGAGATGGTCAGACTGCTGTTGTATCCTCCAGAAGTAATCAAGCTTCAATATTGATGAATAGAAGAATGAAGATACTTGTAGAATACTTCAAAATATCCTTAGATTGCTTTTTCGCTGTGTGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACGATCTTCTATTGATGAAGCTCCTAACTTGTATAGGTTATGTATAGTATTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCTTTCATTCTCTGTTCAACCATCTGCTGTTGTCTCCCGTGTATAATTTCCATCCTTGGTGTTAGAGAGGATCTGACACAAAACAGAGGGGCAACTTCTGAATCCATCAATGCTCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGTGAAAACAACTCTGCTAATATGGAAGGTGGAATTGTGGCTGGAGGAACCGAAAAGGAGCGTGTGATCTCTGGTGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGATAAGTGGTTAAAGATAAATGCATTGTGCCCTCTATGCAAGAGTGAGGTTGGTGAAGACCTAACAGGATTGGGGTCTGGAGAAGATGCCACCCAACAACGGGATGATAGCAGAGTTGTTAATGGTGTCACCAACACCTAG 1212 0.4216 MERPGSFSDSQHIIEIVGSVEASTSALSHHEERISGARLPVPQPLVSASGVSSELNNRNSSFIRRADSRRNRSPVHSGLWISIELVLLLSQIVASVVVLTLSRHEHPHTPLFQWIVGYASGCFATLPLLYWRYYHHNHMREQDSAQSRQTSPRISDPSGSLLSISRNNGGDGQTAVVSSRSNQASILMNRRMKILVEYFKISLDCFFAVWFVVGNVWIFGGRSSIDEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPTYKFKMKKNKRNGENNSANMEGGIVAGGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDLTGLGSGEDATQQRDDSRVVNGVTNT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03147 403 MobiDBLite consensus disorder prediction 383 403 - -
Car04g03147 403 CDD RING-H2_RNF111_like 329 371 - -
Car04g03147 403 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 395 - -
Car04g03147 403 Pfam Ring finger domain 330 371 IPR001841 -
Car04g03147 403 SMART ring_2 330 370 IPR001841 -
Car04g03147 403 SUPERFAMILY RING/U-box 322 378 - -
Car04g03147 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 378 IPR013083 -
Car04g03147 403 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Car04g03147 403 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 395 - -
Car04g03147 403 MobiDBLite consensus disorder prediction 381 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03147 Car-Chr4 59671404 59676384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03147 64 376 C3H Transcription Factor Family AT1G80400 57.367 2.44e-137 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03147 - - gmx:100778728 676.396