Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03143 ATGGGGCATTCAAAGAAAGAAGAAGAAAGAGTTGAAAGAATTATTCGGGGTCTTTTAAAACTTCCAGAAAATCGAAGATGCATCAACTGTAATACCTTGGGACCACAATATGTCTGTACAACTTTCTCAACATTCGTCTGCACAAATTGCAGTGGAATACATAGAGAGTTCACACATAGGGTAAAATCTGTGTCAATGGCCAAATTTACTCCAGAAGAAGTCACTGCTATTCAAGCTGGTGGCAATGAGAGAGCAAAGCAGATTTATTTCAAAGGATGGGATCCTCTGTGTCATTCTTACCCCGATTCTGGTAATATGCACAGACTTAGAGATTTTATCAAGCATGTCTATGTGGATAGAAAATATACCGGTGAAAGGAGTCAAGAAAATCTTCCAAAGATTAGATTGAAGGACAAGGAGGAGTCCCATGAGAGTAAGAAGAGTAGTTCATTTCATTTAGAGTTCATAAGTCCACGTTCAAGTTCCAGTGCAAGAAGCAGTGACTCGAGTTTCAGATATGTATATGATGAAAGCAGAAGTCCTAAATATGTACAAAAATTCTCAAGGCATGGAGGTTTCAGCAGAAGTCCTATAAAATTTGAGGTTGTCGATGACAGGTTTCGAGACGACGAATATAGAAACCGCAGGCATTCGAATCTTGAATCAAAGCTAAGACAACTTTCATTTGATGGACAGAAGAATGCAAACAGATTCCAAGCTCCGGCTCAACGCTCTTTGGGTGAAATAATGATGGAAAATGATTTATCTCCACAAGTTAAACCTTCTGGTGGAGAAGCTTCTGTTCAGGAAAATCCACGTGAACAAAAAAGTAATAAACCAAAAAGTTCCACTGATGTGAGTATTAAGCCTAAGGTTTCTGATACTGTCAATGAAGCTGGACAAGAAAAACCAAGTATGAAACAAGAAAGTGAAAATAACTGGGCCTCATTTGAAGCTTCTACAGAGGAAACTGTTCCTAAAACACCAAACACCAACACAAAAAAACCTGGTTCAACAGAACCAACACCTGAACCAAAAATTTCAACTCCTTTAGACCTTTTACTTCTTGAATTGTCTGGTCCTTTTGCTCCAATCACTAGTGGTGACATTGTTCCAACAACTACAACTGTAGAAAAGGGTTCTACATGGGATTTTTCAGCTACTTCAATGGAGGAGACAACTGCATCATCTTCTGAGCTGGCACAACCATCTAATGAAGCTCCTTTAACACAATCTGAGCTGCATGAAGCAGAAGATTCCATTGAAGTTTCACAAGAGCATAAACCACAGCCAGAAGATTCTATTGAAGTTTCACATGCACAAATACCATCAAGCATGAAATATGCTCCTTCTGTTTCAGTTGGTTGTAGTTCAACAACACAGCCAACAAATTCACCAAACAAAGATGTAGCTTCAAATAATGAGCCATCATTTTCTCCAAATACACATGAATCATCTCATGCTTTTGATGAACAATCTTCACAAACCACCTCAATTCCTACTCAAGACGCCAAACCTGTTACCTCCCAGCCTAGTACAGTTGAAACCAAGTCTAGTGGAAGAAGGGAACTGCCAGAGGACCTTTTTACTGCAAGCTACTTATCTGGACCAGCACCACATGCAGGTTGGCAGAATGTTCAACATCATGTCATGGGATATGGCATGCAGTATTATCCAAATGCAGTGCCTCCCTCAGCATTTCCTATTGCACCAAAATCTATGAACCCTTTTGAAGTGAATGAAGGGAGAGGTCTAACACATGCATCATCATTTCCTTCTATGGCATCAATGCATGGTGTGCTGCCAGCTGTACAAAACAGAACAGGAGTAATGCATGTTTCAAGTCTTGGATCTTTAGAGAGAATGGTGCCTCAGTCCACAAGTCATGCATCCCAAGTTACTGGTATGTGCTTTGATCAAGTTAATAACGATGAGCAACATTTTAGGTCACAAAGAGTTGACACCTTCAATGGTAACATAGGTAGTTTTGAATCTCTAGACACCATTCAACAATCATATGGGGGATATGGGACACATGGAACACCAAATTCTTTTTCCAATTCAAGAGGAAATCCATTTGATTAG 2085 0.3966 MGHSKKEEERVERIIRGLLKLPENRRCINCNTLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTAIQAGGNERAKQIYFKGWDPLCHSYPDSGNMHRLRDFIKHVYVDRKYTGERSQENLPKIRLKDKEESHESKKSSSFHLEFISPRSSSSARSSDSSFRYVYDESRSPKYVQKFSRHGGFSRSPIKFEVVDDRFRDDEYRNRRHSNLESKLRQLSFDGQKNANRFQAPAQRSLGEIMMENDLSPQVKPSGGEASVQENPREQKSNKPKSSTDVSIKPKVSDTVNEAGQEKPSMKQESENNWASFEASTEETVPKTPNTNTKKPGSTEPTPEPKISTPLDLLLLELSGPFAPITSGDIVPTTTTVEKGSTWDFSATSMEETTASSSELAQPSNEAPLTQSELHEAEDSIEVSQEHKPQPEDSIEVSHAQIPSSMKYAPSVSVGCSSTTQPTNSPNKDVASNNEPSFSPNTHESSHAFDEQSSQTTSIPTQDAKPVTSQPSTVETKSSGRRELPEDLFTASYLSGPAPHAGWQNVQHHVMGYGMQYYPNAVPPSAFPIAPKSMNPFEVNEGRGLTHASSFPSMASMHGVLPAVQNRTGVMHVSSLGSLERMVPQSTSHASQVTGMCFDQVNNDEQHFRSQRVDTFNGNIGSFESLDTIQQSYGGYGTHGTPNSFSNSRGNPFD 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03143 694 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Car04g03143 694 MobiDBLite consensus disorder prediction 674 694 - -
Car04g03143 694 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Car04g03143 694 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 694 - -
Car04g03143 694 CDD ArfGap_AGFG 12 122 - -
Car04g03143 694 MobiDBLite consensus disorder prediction 412 434 - -
Car04g03143 694 MobiDBLite consensus disorder prediction 129 151 - -
Car04g03143 694 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Car04g03143 694 MobiDBLite consensus disorder prediction 389 523 - -
Car04g03143 694 MobiDBLite consensus disorder prediction 255 347 - -
Car04g03143 694 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Car04g03143 694 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Car04g03143 694 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Car04g03143 694 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Car04g03143 694 MobiDBLite consensus disorder prediction 389 411 - -
Car04g03143 694 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Car04g03143 694 MobiDBLite consensus disorder prediction 437 518 - -
Car04g03143 694 MobiDBLite consensus disorder prediction 298 345 - -
Car04g03143 694 PANTHER ARFGAP/RECO-RELATED 1 694 IPR044820 GO:0005096
Car04g03143 694 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03143 Car-Chr4 59598911 59606077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03143 12 170 C2H2 Transcription Factor Family AT4G05330 33.333 9.76e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03143 - - cam:101499268 1348.95