Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03114 ATGTTTTCCAGCTCCCAATTCGATGCATCCGCCTTCTCCGGCGGCGGATTCATGTCCTCACAGGCCAACGATTCTTCTCCAGCACCGACTAAAAGCCGCGATAGTCAGGGTTTGGTTCCAGTTACAGTGAAGCAGATAAGCGAAGCATCTCATTCGGGTGATGAAAAGTCCAATTTCGCAATTAACGGTGTAGATCTAACCAATGTGACGTTGGTTGGAATGGTGTATGAGAAAACTGTGAGGGAAACTGATGTTAATTTTGTTTTGGATGATGGAACTGGACGGATCAAATGTCGAAGATGGGTCAATGAGACTTTCGACACAAAGGAAATGGAAGAAATATTGAATGGCATGTATGTTCGTGTTTATGGGCACTTGAAAAGCTTTCAAGGTGTAAGGCAACTTGTTGCCTTTTCTGTCAGGCCCGTGACAAATTTTGATGAGATCTCTTTTCACTTTATTGATTGTATACATAACCACCTCCGCACCAAGCTAAAGATGGAAGGAATCACTTCTGCCCAAACTCCCTCAAACTCGTCTTTTAACACGCCTGTCAAAAATGCAATAAATAGTTCCCAGACACCATCATCAAATCCGGGATATGCACAATATAGCACTGATGGACTCAAGGACTGTGATAAATTAGTTATTGAGTATCTGCAACAGCATTCAGATATGTCAGATGAACGGGGAATACATGTTAATGAACTATCAAAAGAGCTCAAGCTTCCATTGGACAAGATCATGTTGTCGCTGAAGACTCTTGGAGACGATGGTCTGGTATACTCCACCATAGATGACTTTCACTACAAACAAGCTTGA 822 0.4246 MFSSSQFDASAFSGGGFMSSQANDSSPAPTKSRDSQGLVPVTVKQISEASHSGDEKSNFAINGVDLTNVTLVGMVYEKTVRETDVNFVLDDGTGRIKCRRWVNETFDTKEMEEILNGMYVRVYGHLKSFQGVRQLVAFSVRPVTNFDEISFHFIDCIHNHLRTKLKMEGITSAQTPSNSSFNTPVKNAINSSQTPSSNPGYAQYSTDGLKDCDKLVIEYLQQHSDMSDERGIHVNELSKELKLPLDKIMLSLKTLGDDGLVYSTIDDFHYKQA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03114 273 Pfam Replication protein A C terminal 173 267 IPR014892 -
Car04g03114 273 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Car04g03114 273 Gene3D - 203 273 IPR036388 -
Car04g03114 273 MobiDBLite consensus disorder prediction 173 202 - -
Car04g03114 273 SUPERFAMILY "Winged helix" DNA-binding domain 207 271 IPR036390 -
Car04g03114 273 Pfam OB-fold nucleic acid binding domain 69 141 IPR004365 GO:0003676
Car04g03114 273 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 273 - -
Car04g03114 273 SUPERFAMILY Nucleic acid-binding proteins 38 162 IPR012340 -
Car04g03114 273 CDD RPA2_DBD_D 68 161 - -
Car04g03114 273 MobiDBLite consensus disorder prediction 18 37 - -
Car04g03114 273 Gene3D - 34 165 IPR012340 -
Car04g03114 273 PANTHER REPLICATION PROTEIN A-RELATED 1 273 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03114 Car-Chr4 59257746 59263083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03114 1 271 Core DNA Replication Machinery Family AT2G24490 47.872 3.22e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03114 K10739 - gmx:100802512 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03114 04 59257746 59263083 Car04g03114 04 59257746 59263083 ECH