Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03108 ATGGGCGCACCAAAGAAAAGCGCCGCTAGGGTTTCAGTTTCAGAGGACCACGACGAACTTGTTCGTGTTCCGTTGCAAGCTATTCTCTTAGCCGACAGTTTCACAACTAAATTCAGACCTATCACACTTGAACGCCCCAAGGTGCTTTTGCCACTAGTGAATGTTCCGATGATAAATTACACATTGACATGGCTTGAATCAGCTGGTGTAGAAGAGGTTTTTGTTTTCTGTTGTGCTCATTCGAAGCAGGTCATTAACTATTTGGAGAAATCTGAGTGGCTTTCTCAACCTAATTTTACTGTAACAACTATTGAGTCACAGAATTCTGTTAGTGCTGGAGATGCACTGCGTGTTATATACGAGCGCAATGTGATACAAGGAGACTTTGTCCTTATCAGCGGAGATACTGTAAGCAACATGTCACTTACTCAGGCACTTTTagaacataaagaaaggaagaagaaagatagtaagGCTGTAATGACCATGGTTATCAAACGGTCAAAAACTAATCCAGCTATTCATCAGTCTCGACTTGGTACTGATGAAATTTTCATGGCTATTGATCCTAATACCAAGCAACTTTTGTATTATGAGGATAAGGCAGACTATTCAAAAGGCACTCTACATCTTGAAAATTCATTGCTTGCTGATAATCCTTCCCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCGCCAGAAGTCCTTAGCTTATTTACAGACAATTTTGACTACCAACATCTCCGGCGTCATTTTGTCAAGGGACTGCTTGTTGATGATATAATGGGATACCAAATTTTTGTTCATGAAATCCGCTCGGATTATGCTGCAAGGATTGATAATTTCCGAAGCTATGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCACTGGTACCAGATATTATGAATATTGGCAACACAGCTACTAAGCTTGAAAGACAAGGAATATATCGTGGCTCAGAAATTTCGCAATCACAATCAGCTGTTATTGGCCCGTTCACTGTTATCGGATCTGGCACCAAAATTGGCAATAACACTAAGATTTTAAAATCTGTTGTTGGAGAAGGATGTAAAATTGGGTCAAATGTACTCATAGAGGGGTGCTATATATGGGACAATGTCACCATAGAAGATGGCTGTAAACTTAGGCATGCCATTGTATGTGATGGGGTGATTATGAAATCAGGATCTGTTCTGGAACCTGGTGTTGTATTGTCTTTTAAGGTTGTAGTTGGGCAGGGGTTTGTTGTTCCTGCTTATTCACATGTTTCTCTACTACAGCAGCCAATTGAGGAAGATAGCGATGAAGAGCTCGAATATGCTGATAGTACTAGTGCCATCACTAGCACAGTGGATAAGACAGATGGAGTGATTGCTTCCAAAGTGTTGGATACACATTTTATCCCTGCTTCAGAGCTAGGTTTCGGTGGGGTTGGTTATGTTTGGCCAAAATGTGAAGGAGGCCATGAAGAAGAGTGGAGGCACTCAGTGGCACCTATTACTGAAGATAAAATTTTGGAGGCAGTGAAAGCTATGGAAGATGAACTGGAGTTGATTCACGATGGCAAGAACCTTCCACTTTCTGGGGAGCTGATACCTAATTCTAatgatgattcagatgacgatgataatgacgatTCAAGAGATGACTTTGATAAAGAGGTTGAAGCAACTTTTCTCAGGGCTGTGCATGAAAACATACAAGAAAACCATTTGACTTTAGAGGTCAATTCTTTGAAGTTGTCATACAATAAGATAGCTGCTGACTGTGCTGGAGCTTTATTTTATGCAATGATGAAGTATGCTGTAGACATGCCCCATAGTTCAGCTGATAGCTTGGTTCAAAATGTTGAGGCTATACTTACAAAATGGAAAAAGGTTCTTACATCTTATCTGAATGATATGGACGAGCAGATTGAAGTTATTCTAAAATTTGAAGAAATGTGTTTGGAATCTGCTAAAGAGTATGCTCCATTGTTCACAAAGATTTTGCATTACATGTATAATGAAGATATCATAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAGAAAGACGCAGATGAGTCGGATAGAGTATTTGTTAAACAAGCCCAAAAATTAATTCAATGGCTAAAAGAAGCTCCCGAAGAAGACGACGATGAGGATGAGTAG 2181 0.3893 MGAPKKSAARVSVSEDHDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCAHSKQVINYLEKSEWLSQPNFTVTTIESQNSVSAGDALRVIYERNVIQGDFVLISGDTVSNMSLTQALLEHKERKKKDSKAVMTMVIKRSKTNPAIHQSRLGTDEIFMAIDPNTKQLLYYEDKADYSKGTLHLENSLLADNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYQIFVHEIRSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDIMNIGNTATKLERQGIYRGSEISQSQSAVIGPFTVIGSGTKIGNNTKILKSVVGEGCKIGSNVLIEGCYIWDNVTIEDGCKLRHAIVCDGVIMKSGSVLEPGVVLSFKVVVGQGFVVPAYSHVSLLQQPIEEDSDEELEYADSTSAITSTVDKTDGVIASKVLDTHFIPASELGFGGVGYVWPKCEGGHEEEWRHSVAPITEDKILEAVKAMEDELELIHDGKNLPLSGELIPNSNDDSDDDDNDDSRDDFDKEVEATFLRAVHENIQENHLTLEVNSLKLSYNKIAADCAGALFYAMMKYAVDMPHSSADSLVQNVEAILTKWKKVLTSYLNDMDEQIEVILKFEEMCLESAKEYAPLFTKILHYMYNEDIIEEDAILSWEDEKKDADESDRVFVKQAQKLIQWLKEAPEEDDDEDE 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03108 726 Pfam Nucleotidyl transferase 27 167 IPR005835 GO:0009058|GO:0016779
Car04g03108 726 Pfam Bacterial transferase hexapeptide (six repeats) 342 375 IPR001451 -
Car04g03108 726 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 13 725 - -
Car04g03108 726 Pfam eIF4-gamma/eIF5/eIF2-epsilon 645 724 IPR003307 GO:0005515
Car04g03108 726 SUPERFAMILY ARM repeat 558 717 IPR016024 -
Car04g03108 726 CDD LbH_eIF2B_epsilon 343 421 - -
Car04g03108 726 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 12 305 IPR029044 -
Car04g03108 726 MobiDBLite consensus disorder prediction 543 558 - -
Car04g03108 726 SUPERFAMILY Trimeric LpxA-like enzymes 269 431 IPR011004 -
Car04g03108 726 CDD eIF-2B_epsilon_N 25 241 IPR035543 -
Car04g03108 726 Gene3D Hexapeptide repeat proteins 307 437 - -
Car04g03108 726 MobiDBLite consensus disorder prediction 535 558 - -
Car04g03108 726 CDD W2_eIF2B_epsilon 561 717 IPR044123 GO:0005085|GO:0031369
Car04g03108 726 Gene3D - 546 725 - -
Car04g03108 726 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 371 IPR029044 -
Car04g03108 726 ProSiteProfiles W2 domain profile. 553 724 IPR003307 GO:0005515
Car04g03108 726 SMART 542_3 633 720 IPR003307 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03108 1 717 Eukaryotic Initiation Factors Gene Family AT2G34970 63.586 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03108 K03240 - gmx:100784894 1222.22