Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03100 ATGGATGAACATTCAATTAAAAGAGGCATTGATGGGATGGCAGTACCTCGAAAAAGGACGGGCCTGGTGTTAAGAGATACTGCTAATACTAGAGACCGAAATGGTCAAATTTGCAGCCGATTGGGTCGCAGCAGTACAGCCAACACTCCTAAGGTTGCGCAAGTCAGATCTTCGGAAAAAGGCAAGTCTTTAAGGCCTTCAATGCAGTCATTTTCAAGTGGCAAGGAGGTCATTGGTAGTTCCCGTAGAACAACTACTAATCCAGCAAAACCGCTTATAGAGCCTCGGAAAACATCAACTTCTCAATTTGAGACAGGTTCATCTGTAACCAGTAGCGGACATGATGAACCAGAAATTTCACAGCTCAACCCTCTGCCAGTAAAATTTTCAACTGGGCTTCAAGCTGAAGGGAAAGGTACAAAATCTGCTGAAGGGAAAGGTACAAAATCTACTAATGTGATTCGGATGAAAGTAGGAAAATCTAATGCAGTATCAGATTTAAGATCTCAAAGGAATTTGAATCAAAGACCTGGACTTCGTCAACAAGAAATTGAAAGCGTTGGTCCGGTGACACAAGCTGTTTCTAGCAAGTATAAATTGAGGAACCTCAGATGCAACACTATATCTGATGCCATCCCTTCTTCTTGCTCAACATCAGATTCTACCCTTAATAGAAAGAAAGCTGTTATAAAAAAGGGAAACTCTGGAGAGGATAGTAGCTCCACTGTTAAAGGAAAGAAGACGACTGGACCTTCACCGGAAGGATTGAATTCTGGCTCCAGAAATTGCATATCTATATCTGATGCAAGAAGATCTAGAAATATTCCTTCTCATAGTGACAATAGCAGAGCATCAGTTAGAACTAAAAAATCAGTTAGTAGTTATGCCAGGGGAAGATTTTCTAGCCAAGGAAATGAAAATCCACGCGAAACCAATGAGTCCCCTGTTGGGTCTCCTGGCATTTTATGTCATGCATCCGAGGAGACTCCTGTAAGTCGTCCAAACTCTTATAGAAGGCCAGATACTGGTAGTGAGGAGTTATGTGGTATTATGCGCACATCCCTTGAAGAATATGACACCCCTCATTCTCTAATAAATCAGGATGGTTATTCAGAGGTATTATTTGCACTTGAGAGGCTTGAACAAGATGAAGAATTAACCGATGAGCAAATTCATTTACTAGAGACCAACATGCTTCTTGATGGAGTTAACTTTGATCATCATAGAGACATGCGGTTGGATATTGATAACATGTCATATGAGGAACTATTAGCTCTCGAAGAGAGGATCGGTACTGTGAGTACAGCTCTAACAGAGGAAGCACTTTCAGATTGTCTTAAAAGAAGTACCTATCAGTCTGCTCCTTCAAATGATCCATCTGACTATTTCAATGAAGAAAATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGACTCTGTGCTGCACGCATAAGTTTCATGTGGTTTGTATACAGGACTGGTTGAAGCAGAAGAACTGGTGCCCTATTTGCAAAGGGTCAGCGGCACAGTCCAATTCATCTTCATCTCATTGA 1575 0.4133 MDEHSIKRGIDGMAVPRKRTGLVLRDTANTRDRNGQICSRLGRSSTANTPKVAQVRSSEKGKSLRPSMQSFSSGKEVIGSSRRTTTNPAKPLIEPRKTSTSQFETGSSVTSSGHDEPEISQLNPLPVKFSTGLQAEGKGTKSAEGKGTKSTNVIRMKVGKSNAVSDLRSQRNLNQRPGLRQQEIESVGPVTQAVSSKYKLRNLRCNTISDAIPSSCSTSDSTLNRKKAVIKKGNSGEDSSSTVKGKKTTGPSPEGLNSGSRNCISISDARRSRNIPSHSDNSRASVRTKKSVSSYARGRFSSQGNENPRETNESPVGSPGILCHASEETPVSRPNSYRRPDTGSEELCGIMRTSLEEYDTPHSLINQDGYSEVLFALERLEQDEELTDEQIHLLETNMLLDGVNFDHHRDMRLDIDNMSYEELLALEERIGTVSTALTEEALSDCLKRSTYQSAPSNDPSDYFNEENDIKCCICQEEYVVGDEVGTLCCTHKFHVVCIQDWLKQKNWCPICKGSAAQSNSSSSH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03100 524 Coils Coil 377 397 - -
Car04g03100 524 Pfam Ring finger domain 470 512 IPR001841 -
Car04g03100 524 MobiDBLite consensus disorder prediction 230 344 - -
Car04g03100 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 516 - -
Car04g03100 524 SMART ring_2 471 511 IPR001841 -
Car04g03100 524 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Car04g03100 524 SUPERFAMILY RING/U-box 464 514 - -
Car04g03100 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 516 IPR045191 GO:0061630
Car04g03100 524 MobiDBLite consensus disorder prediction 234 314 - -
Car04g03100 524 MobiDBLite consensus disorder prediction 27 123 - -
Car04g03100 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 519 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03100 Car-Chr4 59138098 59140201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03100 372 518 C3H Transcription Factor Family AT2G15530 47.682 4.13e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03100 - - gmx:100812055 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03100 04 59138098 59140201 Car04g03100 04 59138098 59140201 ECH
Car04g03100 04 59138098 59140201 Car05g03035 05 75210707 75216569 PCT