Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03076 ATGGAACCTGATCAAGAAGAGCATGCTCTTATTGAAAGAGAAAATGTGGTGCCAAATCCTTCAGGATCCGACGTGCTTGCCTCTATTCAACGaaGGGTGAGTGGTCCTACAAGAAGATCAACCCAAGGAAGATGGACAGCGAATGAGGATAGACTTTTGATTGATGCAGTGAACAAATTTAATGGAAAAAGTTGGAAAAAGATAGCTAAAGCTGTTAGTGGCAGAACAGATGTTCAATGTTTGCATCGTTGGCAGAAGGTTCTTAATCCTGATCTCATAAAAGGACCTTGGACACAACAGCTTGTCATGATAAATGGGAAAAAAGATTGGTCTCGTATATCAAAATCTCTTCCAGGTCGCATAGGAAAGCAATGTAGAGAAAGATGGTTTAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACCAAAGAAGAGGAGTTGATTCTTATAAATAATCACCAAATATATGGGAATAGATGGGCTGAAATAGCCAAATTTCTGCCTGGAAGGAGTGAAAACAATATCAAGAACCATTGGAACTGCTCTCTAAAGAAAAGGGTTGATCAATTAAAGGACTCTATGAATACCACGATATACGACAACACACAAAGTTTGGACTCAAATACTGATTTTGATAAAGCTACCTCAAATAAAACAAGTATTGAATCTTGTGAAGGTCAAATCAATGGGATCAATGATGATACTCCTCAAAGCATAAACAATGATACAACAACCTTTGATGTTATGAACATTGGTCTTTTAGCAACACCCAATACTTCAAGATCTAATTCCATTTGTGATAATAACCCATCAAATTCTAAAGAAAAATCATTTGATACAAGTCCAAGCCTACAAGATATTTTTAGGACATTAAGGAATGCTGCAAGGAAATTTAAAAACATTCCATCTATCCTAAGACGACCCAAAAAATATTATTGTACTTTATAA 951 0.3575 MEPDQEEHALIERENVVPNPSGSDVLASIQRRVSGPTRRSTQGRWTANEDRLLIDAVNKFNGKSWKKIAKAVSGRTDVQCLHRWQKVLNPDLIKGPWTQQLVMINGKKDWSRISKSLPGRIGKQCRERWFNHLNPDIKRTAWTKEEELILINNHQIYGNRWAEIAKFLPGRSENNIKNHWNCSLKKRVDQLKDSMNTTIYDNTQSLDSNTDFDKATSNKTSIESCEGQINGINDDTPQSINNDTTTFDVMNIGLLATPNTSRSNSICDNNPSNSKEKSFDTSPSLQDIFRTLRNAARKFKNIPSILRRPKKYYCTL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03076 316 ProSiteProfiles Myb-like domain profile. 134 184 IPR001005 -
Car04g03076 316 CDD SANT 141 181 IPR001005 -
Car04g03076 316 ProSiteProfiles Myb-like domain profile. 100 133 IPR001005 -
Car04g03076 316 Gene3D - 41 91 - -
Car04g03076 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 188 IPR017930 -
Car04g03076 316 SMART sant 93 135 IPR001005 -
Car04g03076 316 SMART sant 138 186 IPR001005 -
Car04g03076 316 SMART sant 41 90 IPR001005 -
Car04g03076 316 MobiDBLite consensus disorder prediction 260 282 - -
Car04g03076 316 Gene3D - 140 214 - -
Car04g03076 316 SUPERFAMILY Homeodomain-like 40 99 IPR009057 -
Car04g03076 316 Pfam Myb-like DNA-binding domain 100 133 IPR001005 -
Car04g03076 316 Pfam Myb-like DNA-binding domain 43 88 IPR001005 -
Car04g03076 316 Pfam Myb-like DNA-binding domain 139 181 IPR001005 -
Car04g03076 316 PANTHER MYB PROTEIN-RELATED 28 232 - -
Car04g03076 316 CDD SANT 44 88 IPR001005 -
Car04g03076 316 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 28 232 - -
Car04g03076 316 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Car04g03076 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 133 IPR017930 -
Car04g03076 316 Gene3D - 98 138 - -
Car04g03076 316 CDD SANT 96 133 IPR001005 -
Car04g03076 316 ProSiteProfiles Myb-like domain profile. 37 88 IPR001005 -
Car04g03076 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03076 Car-Chr4 58808060 58811641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03076 32 206 MYB Transcription Factor Family AT5G11510 61.538 1.72e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g03076 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03076 - - cam:101493427 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03076 04 58808060 58811641 Car04g03076 04 58808060 58811641 ECH
Car04g03076 04 58808060 58811641 Car05g03081 05 75609151 75615632 PCT