Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03061 ATGATTATTAAAAAGAATCTCAAATCCGAAATGCCGACTCGGAAACGGCGTAGACTCGGTAACTCGGAGGAAAACGACTCAAAGTTGACTCGGAACAAGAAGAAGACGAAATTAAACGGAAATTATCCGTTGAGTCTTCTCGCCGGTGCAATTCCCGCTAGTCTTAGCGGCTTACTCGGTGCCACCGTTGCAACCACCGTGGCATCATCGGAAAACGGATTTTCTGTATCAGACGGAAAATCCGATATCAAGAATGCGACTGTGGCAACGACCGGGACGCGTCCTCCGCTGATAAGAACCTCGCGCGGCCGCCTTCAAGTGCTGCCGTCGCGGTTTAATGATTCAGGGGAAAGGCGCCCTGCCCCTGCCGCTGCCGCCGCCTCCACTAGCTTTAGTGAATTTGAATTTGAAGAATTCAGTTTCAAGAATTGCAGCGGAAAAGGAAAGAGCGGGATGGGGACAGGTCGCCGTAACCGGCCCCGCGGTTATTCGGTTTTGTGTGAGGAGGTTTTGCATAAGAATTTTGGTAAGGAATTGAGTTTGCGTGAGTTGTTTGAGGAATCAAAGTTAAGTAATGGAGTTTTGAAGAAAGAGGAGGTTGAAGAGGAGAAGAAAGAGGGGTATTTTGGACCACAAGATTTTTATGCAGGTGATATAATTTGGGCTAAGGCTAAGAAAAAGGAACCTTTTTGGCCTGCAATTGTCATTGATCCTATGAGTCAAGCACCTGAGCTGGTTTTGAGATCATGTATAGCTGATGCTGCTTGTGTCATGTTTCTTGGCTACTCTAGGAATCAAAACCAAAGGGATTATGCATGGGTGAAGTATGGAATGATTTTTCCATTTGTAGACTATGTTGACAGGTTCCAAGAGCAGTCTGAATTGAGTTACTGTAATTCCTCTCAATTTCAAACGGCAGTTGAGGAGGCGTTTTTGGCTGATCAGGGGTTTGTAGAGAAATTGATGGCAGATATAAATACCGCGGCTGGTAATAATGATTGCAGTAATAAGTCTAGTCTTAATGGCTTTCAGAATGTCGCTGCTTCATACCAGAATGTGGGACGTCCTGTTCAGAAGAAGGAATTATTTGACAGGAAGAAAAACGCACAATTTTGTGAAGAATGTGGGTTGGACCTTCCTTTCAATGTGTCAAAGAAAACAAAGGATTTGACTCCTAGTGGTCAATCACTATGTAGAACATGTGCTAAGTTAACAAAATCAAAACATTATTGTGGCATATGTAAGAAAGTTTGGAACCATTCGGATAGTGGAAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCCAGCATCCTTTTCAAGAATCTTGGAAGCACTGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAACTTTGAATTATCCGATTCGGAAAAACCACATCCAAAAGTCAAATGGAACAAAAACAATGGGCAGATAGTACTTCCAAACAAGGTCACTGTTCTCTGCAATGATGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTATGTGCAAGTGTGGTTTTTGTGAGCCTGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAGAACAAGTATTCAGGTTAAAGGATGCATGCTGTCCCTGGAACAATGGATGCTGCAGTTGGCCGAATGTCATGCTAAGTCTATAATTTCTGTCAAACCTAAAAGACCTTCCTCAAAAGAAAGAAAACATAAATTGCTTACCTTTCTTCAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGTGTCAGATGTCAAATAGCCGTTCATCAAGAATGCTACGGAGCAAGAAATGTCCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACTCCAGACATCACGCGAGAGTGTTGTCTTTGTCCTATAAAAGGTGGTGCTCTAAAGCCTACTGATGTTGATCCATTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCCGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTGAGTATTCCATCAAATTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGTTCGTGCACACAATGTTGCAAGTGTTCAACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCGGAGAAAAATGGTAAACCGACGACAAGAATGGTTTCTTACTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCATGGGGTCATTTCAACTAAAAGCCTTGTCCAAACTAAGAGAAAAGTTGGGTCAAGATTGATTTCATCTAATAGAATAAAGGTAGAAGACACTCCTCCAGCAGATGACACTGAACATGACCCATTTTCTGCTGCTAGGTGCAGAATCTTTGTTAGAACAAACCATACAAAAAAGAGAGCGGCAGATGAAGCTATTCCTCACAAAGTGAAGGGTCACTCCCATCATCCTTTAGATGCAATACAGAGATTAAATGCATGCAAAGTGGTAGATGAGTCTCAGACATTTTCATCTTTTAGGGAACGCCTTCATCACTTACAGAGAACCGAAAATGATCGGGTCTACTTCGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGAAGAAGTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTAAGGCGCAGCATTGCAGATCTAAGGGAGGCACGTTATAAGTTAGAAAGGAAAGATTGTTATCTGTTCAAGATAAGTGAAGAAGTGGTAGTTGACGCAACTGACAAAGGAAATATAGCACGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATAGCACTCATTGCTAAGGCTAACGTATCTGCTGGCGATGAGCTAACGTATGACTACTTATTTGATCCTGATGAGCCAGATGAATTTAAAGTACCTTGTTTATGTAAAGCACCAAACTGCAGGAAATTCATGAATTAG 3114 0.4249 MIIKKNLKSEMPTRKRRRLGNSEENDSKLTRNKKKTKLNGNYPLSLLAGAIPASLSGLLGATVATTVASSENGFSVSDGKSDIKNATVATTGTRPPLIRTSRGRLQVLPSRFNDSGERRPAPAAAAASTSFSEFEFEEFSFKNCSGKGKSGMGTGRRNRPRGYSVLCEEVLHKNFGKELSLRELFEESKLSNGVLKKEEVEEEKKEGYFGPQDFYAGDIIWAKAKKKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYSRNQNQRDYAWVKYGMIFPFVDYVDRFQEQSELSYCNSSQFQTAVEEAFLADQGFVEKLMADINTAAGNNDCSNKSSLNGFQNVAASYQNVGRPVQKKELFDRKKNAQFCEECGLDLPFNVSKKTKDLTPSGQSLCRTCAKLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKPHPKVKWNKNNGQIVLPNKVTVLCNDVEGIYFPSLHLVMCKCGFCEPEKQALSEWERHTGSKFRNWRTSIQVKGCMLSLEQWMLQLAECHAKSIISVKPKRPSSKERKHKLLTFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPIKGGALKPTDVDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGKPTTRMVSYCAYHRAPNPDTVLIMQTPHGVISTKSLVQTKRKVGSRLISSNRIKVEDTPPADDTEHDPFSAARCRIFVRTNHTKKRAADEAIPHKVKGHSHHPLDAIQRLNACKVVDESQTFSSFRERLHHLQRTENDRVYFGRSGIHGWGLFARRSIQEGEMVLEYRGEQVRRSIADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKANVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03061 1037 SUPERFAMILY SET domain 888 1034 IPR046341 -
Car04g03061 1037 CDD PHD_TCF19_like 411 461 - -
Car04g03061 1037 PANTHER PHD FINGER PROTEINS 1 1037 - -
Car04g03061 1037 CDD PHD_ATX3_4_5_like 604 650 IPR042011 -
Car04g03061 1037 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1037 - -
Car04g03061 1037 SMART set_7 895 1018 IPR001214 GO:0005515
Car04g03061 1037 Pfam PWWP domain 217 310 IPR000313 -
Car04g03061 1037 ProSiteProfiles PWWP domain profile. 216 285 IPR000313 -
Car04g03061 1037 Gene3D - 211 316 - -
Car04g03061 1037 Gene3D SET domain 803 1037 IPR046341 -
Car04g03061 1037 Pfam PHD-zinc-finger like domain 658 770 - -
Car04g03061 1037 ProSiteProfiles Zinc finger PHD-type profile. 408 464 IPR019787 -
Car04g03061 1037 MobiDBLite consensus disorder prediction 1 36 - -
Car04g03061 1037 Pfam SET domain 906 1011 IPR001214 GO:0005515
Car04g03061 1037 ProSiteProfiles Zinc finger PHD-type profile. 602 653 IPR019787 -
Car04g03061 1037 ProSitePatterns Zinc finger PHD-type signature. 605 650 IPR019786 -
Car04g03061 1037 ProSiteProfiles Post-SET domain profile. 1021 1037 IPR003616 -
Car04g03061 1037 CDD SET_SETD1-like 882 1033 - -
Car04g03061 1037 SUPERFAMILY FYVE/PHD zinc finger 603 667 IPR011011 -
Car04g03061 1037 SMART PostSET_3 1021 1037 IPR003616 -
Car04g03061 1037 SMART PHD_3 410 462 IPR001965 -
Car04g03061 1037 SMART PHD_3 715 771 IPR001965 -
Car04g03061 1037 SMART PHD_3 604 651 IPR001965 -
Car04g03061 1037 CDD ePHD_ATX3_4_5_like 659 770 IPR041955 -
Car04g03061 1037 ProSiteProfiles Extended PHD (ePHD) domain profile. 656 771 IPR034732 -
Car04g03061 1037 SUPERFAMILY FYVE/PHD zinc finger 408 466 IPR011011 -
Car04g03061 1037 Pfam PHD-finger 617 651 - -
Car04g03061 1037 SUPERFAMILY Tudor/PWWP/MBT 208 315 - -
Car04g03061 1037 Pfam PHD-finger 410 463 IPR019787 -
Car04g03061 1037 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1037 IPR025780 -
Car04g03061 1037 MobiDBLite consensus disorder prediction 13 33 - -
Car04g03061 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 465 IPR013083 -
Car04g03061 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 653 IPR013083 -
Car04g03061 1037 ProSiteProfiles SET domain profile. 895 1012 IPR001214 GO:0005515
Car04g03061 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 773 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03061 Car-Chr4 58616432 58631890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03061 605 770 C2H2 Transcription Factor Family AT3G14740 33.908 7.23e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g03061 zf-HC5HC2H_2 3.8e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03061 - - gmx:100808761 1548.87