Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03056 ATGGATTTTGATAGACTTGGACCGTCCGATCCAGGTGGTTCTTCCCGCCGCTCCACCGCACCTCTAACAAAATCCACCACACCCAATCCCACCCAAAAAAATAAAAAGAAACTCATCATACTTTCAATCCTCGCCGCCGTTTTAATCATCGCCTCCGCAATCTCCGCCGCACTCATCACCGTCGTTCGTTCCCGCGCTTCATCCAATCAAAATTCCCCGAACCTCCGCGCCAAACCAACTCAAGCAATCTCCCGAACCTGTAGCAAAACTAGATTCCCCACACTTTGCATCAATTCACTCCTCGATTTCCCCGGCTCCACCTCCGCCTCCGAGCAAGAACTAGTTCACATCTCATTCAACATGACTCACCGTCACATCGGCAAAGCACTCTTCGCTTCTTCAGGCCTCTCGTACACAGCAGCAAATCCACGGGTCCGTGCTGCATACGAGGATTGCCTAGAACTGTTAGACGAATCCATGGACTCAGTTAAACTGTCTATGGATTCACTTAATACGTTCTCGACTTTATCCCGCGATGACGACACACTGTCTAACATCGCGGGATCAAACGAGGATGTGATGACGTGGCTCAGTGCCGCGTTAACTAACCAAGACACGTGTCTCGAGGGATTTGAAGACACTAGCGGGAGCGTGAAGGATCAGATGGTTGGTAATTTAAAGGATTTGTCGGAACTCGTGAGTAATTCACTCGCGATATTTTCGGCGAGTGGTGATGGTGATTTCACTACTGGAGTGCCGATACAGAACAAGAGACGGTTATTGGAAATTGGCGAAATTTCGCGAGAATTTCCGAAATGGATTAAGAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATACAAGCTGATATTGTTGTGTCTAAGAGTGGGAATGGTACGGTGAGGACAATCGCTGAAGCGATTAAGAAAGCGCCGGATCATAGTAGCCGTCGATTCATAATCTACGTGATGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTTGGGAAAAAGAAAACCAATATTATGTTGATAGGAGACGGGAGGGGTAAGACTGTCATTACAGGGAGAAAAAGTGTTGCAGATGGCATGACCACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTGCCAGGTTCATGGCACGTGACATCACGTTTGAGAACTATGCTGGACCGTCAAAGCATCAAGCGGTGGCGCTCCGCATCGGAGCAGATCACGCGGTGGTGTTCCGATGCAACATTTTGGGGTACCAAGATTCTTGCTATGTGCACTCTAATCGTCAATTTTTCCGTGAATGCGACATTTATGGCACAGTAGATTTTATATTTGGAAATGCTGCGGTAGTTTTTCAAAAGTGCAATATTTACGCACGAAAGCCCATGGACCAACAAAAGAACACTATCACGGCCCAAAATAGAAAAGACCCGAATCAAAATACGGGTATATCTATTCATGATTGTCGGATCCTACCTGCCCCAGATCTTGCCCCAGTTAAGGGCAGCGTTCAAACATATTTGGGTCGTCCGTGGAAAATGTATTCTAGGGCTGTATATATGTTGTCGTATATGGGTGATCACGTGGACCCACATGGATGGTTGGAATGGAATGGAGACTTTGCTTTAGATACATTATATTATGGTGAGTATATGAATTATGGGCCCGGTGCCGCTATTGGACAACGGGTCAAATGGCCCGGATATCGGGTCATTACTTCAAATGTGGAGGCCAATAGATACACCGTGGCCCAATTCATCTCCGGTTCGTCGTGGTTACCGTCCACCGGTGTGGCATTTTTGGCCGGGCTATCCACTTGA 1821 0.4723 MDFDRLGPSDPGGSSRRSTAPLTKSTTPNPTQKNKKKLIILSILAAVLIIASAISAALITVVRSRASSNQNSPNLRAKPTQAISRTCSKTRFPTLCINSLLDFPGSTSASEQELVHISFNMTHRHIGKALFASSGLSYTAANPRVRAAYEDCLELLDESMDSVKLSMDSLNTFSTLSRDDDTLSNIAGSNEDVMTWLSAALTNQDTCLEGFEDTSGSVKDQMVGNLKDLSELVSNSLAIFSASGDGDFTTGVPIQNKRRLLEIGEISREFPKWIKKRDRRLLSLPVSEIQADIVVSKSGNGTVRTIAEAIKKAPDHSSRRFIIYVMAGRYEENNLKVGKKKTNIMLIGDGRGKTVITGRKSVADGMTTFHTASFAASGARFMARDITFENYAGPSKHQAVALRIGADHAVVFRCNILGYQDSCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMDQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLAPVKGSVQTYLGRPWKMYSRAVYMLSYMGDHVDPHGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRVITSNVEANRYTVAQFISGSSWLPSTGVAFLAGLST 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03056 606 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 240 IPR006501 GO:0004857
Car04g03056 606 CDD PMEI-like_3 87 242 - -
Car04g03056 606 SUPERFAMILY Pectin lyase-like 289 603 IPR011050 -
Car04g03056 606 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 241 IPR035513 -
Car04g03056 606 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 242 IPR035513 -
Car04g03056 606 SMART PMEI_2 78 239 IPR006501 GO:0004857
Car04g03056 606 Gene3D - 286 604 IPR012334 -
Car04g03056 606 Pfam Plant invertase/pectin methylesterase inhibitor 82 239 IPR006501 GO:0004857
Car04g03056 606 PANTHER PECTINESTERASE 28 604 - -
Car04g03056 606 MobiDBLite consensus disorder prediction 1 32 - -
Car04g03056 606 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Car04g03056 606 PANTHER PECTINESTERASE 28 604 - -
Car04g03056 606 MobiDBLite consensus disorder prediction 12 32 - -
Car04g03056 606 Pfam Pectinesterase 292 589 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03056 Car-Chr4 58526701 58531230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03056 1 605 Carbohydrate Esterase AT5G53370 63.158 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03056 - - gmx:106796002 936.791