Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03055 ATGGAGTTGGATAGCATTGAGTGTGTGTCATCTTCTGATGGAATGGATGAAGATGAGATCcaacatcgtattcttcatcctcatccacatcataatcatcaCTCTGAGTTTTCTTCAATGAAACCTCGTAATGGAAATAACAATCATGTTGTTATTGGTTCTACAACTATTGCTCCTGCAACAAGCGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGACACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACTTGTAGACAAGAGCTAGGAGATATTAGGTGTTTGGCATTGGAGAAGGTTGCAGAATCACTTGAGTTACCTTGCAAGTACTTCTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACACTTGTCCTTACGCTGGATCAGAGTGCTCCGCCGTTGGAGATATTCCCTTCCTTGTTGCACATTTGAGGGACGATCATAAGGTGGATATGCATACCGGATGCACATTCAACCACCGTTATGTGAAGTCGAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTCGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTCGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGATGAGAACGAGGCTCGGAACTATACCTATAGCCTTGAGGTTGGTGCAAATGGCAGAAAACTCATTTGGGAGGGTACACCACGGAGTATCCGTGACAGCCACCGTAAAGTTCGAGATAGCCACGACGGTCTCATAATTCAACGAAACATGGCCCTATTTTTCTCAGGTGGCGATAGGAAGGAATTGAAACTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGGGGTGTGTGTATACCAAATCTTTGCAGCTGA 996 0.4207 MELDSIECVSSSDGMDEDEIQHRILHPHPHHNHHSEFSSMKPRNGNNNHVVIGSTTIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03055 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 121 IPR013083 -
Car04g03055 331 ProSiteProfiles Zinc finger SIAH-type profile. 122 182 IPR013010 GO:0008270
Car04g03055 331 Pfam Seven in absentia protein family 111 310 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car04g03055 331 SUPERFAMILY TRAF domain-like 122 314 - -
Car04g03055 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 176 310 IPR008974 GO:0005515
Car04g03055 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 322 - -
Car04g03055 331 CDD Sina 183 311 - -
Car04g03055 331 ProSiteProfiles Zinc finger RING-type profile. 69 105 IPR001841 -
Car04g03055 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 322 - -
Car04g03055 331 MobiDBLite consensus disorder prediction 27 46 - -
Car04g03055 331 SUPERFAMILY RING/U-box 55 111 - -
Car04g03055 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 175 IPR013083 -
Car04g03055 331 CDD RING-HC_SIAHs 67 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03055 Car-Chr4 58518737 58525282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03055 40 317 C3H Transcription Factor Family AT2G41980 75.801 5.49e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03055 K04506 - zju:107414770 641.728