LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g03052	ATGGGAAGAAAAGGAGGAAGCTGGTTCTCCTCTGTTAAGAAAGTTTTTAAGTCATCCTCTTCTTCTAAAGACACATCAGTGCCAGTCTCCACGCCACTGCACATAGACAAAAAGAAGGAGAACAGAGAGAAATTGCAGCATGAAGTGGCAGAGGAGGTGTCATTTGAGCATTTTCCTGCAGAGAGTTCACCAGATGATGTGACAAATGAGGAAAGCACAACATCAACACCTTTGATATCAGAAGAGAGAAATCATGCAATtgctgttgcagaagccacagcagcagctgctgaagctgctgttatagctgctcaagcagctgctAGAGTTGTGAGATTGGCTGGTTATGGACGACATTCAAAGGAAGAAAGAGCTGCAACATTCATTCAATCACACTATAGAGGATACCTAGCTCGGCGTGCACTACGCGCATTGAAAGGATTAGTGAGGCTGCAAGCATTAGTAAGAGGACACAATGTTCGCAAACAATCTCAGATGACAATGCGATGTATGCAAGCATTAGTGCGGGTACAGGCACGGGTACGAGCACGTCGACTTCAATTGAGTCACGATAATCTTCATAAGGCAATAGAGGAAAACGAAGAAAAGGAAGAATTTATGAGGCAACATGAGACTATTACTAAGCCTATGAGTCCCATGAGGAGACCATCAAGCATTAATAATAATAACAATGGTTGGGATAATAGGCGTCAAAGTATCAAAAAAGCTAAAGAAAATGATTTAAGAAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCATATGCTTTCAACTATCACCAACAACAACAAAAGCAAACTCAACATAGAGACCCAAATGGTGATGATGTTGATATGGGACCTTATCAACCCAATGATAGTGACAAAGCCCAATGGGGTTGGAATTGGTTGGAGCGTTGGATGTCATCACAACCATACAACAACCTAAGACACTTAGGACAACGTGAGACCTCTTACATGACCCTTAATTCCacaacatcaacaacaacagacaacaTGTCTGAAAAAACTGTAGAAATGGACATGGTTGCAACACCAAACCGATCCAACTTCAATATGGGCCTAATGGCCCAAGATGTTCATGACTCAAGCCCAAGTTTCGCTAGACACAATCAGAGACCACCTAGCCCAGGTAGACCTAGCTACATGGCCCCAACTCAATCTGCAAAGGCCAAAGTTAGGGCCCAAGGCCCATCTAAACAGTGGATTCCATCTGGGCCTAACTGGAATCCGTCTACAAAAGGAGGATCTGTTGTTGGATCGGGCTGTGACTCGTCGAGCTCAGGTGGTGGAACGGCTACTTACCAATTTCCAAAAAGCCCAGGCCCGAAATTTAATGGCGTTCGTTCGGAGTCTAGACGGATTGTGGGCAGCAGTCAAGACTATGTTGAGGATTGGGCCCTTCCACTTGGAGCCCATGGTTGGGCATAA	1455	0.4165	MGRKGGSWFSSVKKVFKSSSSSKDTSVPVSTPLHIDKKKENREKLQHEVAEEVSFEHFPAESSPDDVTNEESTTSTPLISEERNHAIAVAEATAAAAEAAVIAAQAAARVVRLAGYGRHSKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQSQMTMRCMQALVRVQARVRARRLQLSHDNLHKAIEENEEKEEFMRQHETITKPMSPMRRPSSINNNNNGWDNRRQSIKKAKENDLRKHEAAMKRERALAYAFNYHQQQQKQTQHRDPNGDDVDMGPYQPNDSDKAQWGWNWLERWMSSQPYNNLRHLGQRETSYMTLNSTTSTTTDNMSEKTVEMDMVATPNRSNFNMGLMAQDVHDSSPSFARHNQRPPSPGRPSYMAPTQSAKAKVRAQGPSKQWIPSGPNWNPSTKGGSVVGSGCDSSSSGGGTATYQFPKSPGPKFNGVRSESRRIVGSSQDYVEDWALPLGAHGWA	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g03052	484	MobiDBLite	consensus disorder prediction	370	460	-	-
	Car04g03052	484	Pfam	Protein of unknown function (DUF4005)	378	426	IPR025064	-
	Car04g03052	484	Gene3D	-	119	173	-	-
	Car04g03052	484	SMART	iq_5	121	143	IPR000048	GO:0005515
	Car04g03052	484	PANTHER	IQ-DOMAIN 21	1	456	-	-
	Car04g03052	484	MobiDBLite	consensus disorder prediction	65	80	-	-
	Car04g03052	484	MobiDBLite	consensus disorder prediction	269	292	-	-
	Car04g03052	484	Coils	Coil	183	203	-	-
	Car04g03052	484	MobiDBLite	consensus disorder prediction	409	443	-	-
	Car04g03052	484	ProSiteProfiles	IQ motif profile.	122	150	IPR000048	GO:0005515
	Car04g03052	484	ProSiteProfiles	IQ motif profile.	146	173	IPR000048	GO:0005515
	Car04g03052	484	MobiDBLite	consensus disorder prediction	216	235	-	-
	Car04g03052	484	Pfam	IQ calmodulin-binding motif	123	143	IPR000048	GO:0005515
	Car04g03052	484	Pfam	IQ calmodulin-binding motif	149	163	IPR000048	GO:0005515
	Car04g03052	484	Coils	Coil	241	261	-	-
	Car04g03052	484	MobiDBLite	consensus disorder prediction	17	80	-	-
	Car04g03052	484	MobiDBLite	consensus disorder prediction	33	59	-	-
	Car04g03052	484	PANTHER	IQ-DOMAIN 5-RELATED	1	456	-	-
	Car04g03052	484	MobiDBLite	consensus disorder prediction	218	235	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g03052	Car-Chr4	58439805	58445372	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g03052	1	452	IQD Protein Family	AT3G49260	50.105	1.03e-100	308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g03052	-		-	gmx:100798026	503.827