Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03043 ATGGCTTCACCTTCAACAACACTGAGCCGAAGAAGAACACAGGCTCCAAAACCAGCTCCCAAAAAACTCTCCAACTTCGACGACGTCGTTTGCGAGGAATGTAGTTCCGGCAAATCCCCAACCAAGTtgcttctttgcgacaaatgcgacaaaggctatcacattttctgcctcagacctaTCCTTCCTTCCGTTCCCAAATCCTCTTGGTTTTGCCCCTCTTGCTCTCACAACACCAACAATCCCAAATCTTTTCCTCTTGTACAGACGAAAATTATTGATTTCTTCAAAATCCAACGATCCATTGATTCACCTCAGATTTCGAATCAAGATCTAAGGAAGAAGAGAAAGAGGGGTAGTAGTTTGGTGGTTTCGAAAAAGAAAAGGAAGCTGTTGTCGTTTGTGCCAAGTGATGATTCTAAGAGGAGGTTGGAACAGATGGCGTCGTTGGCGACGGCGTTGACTGCAACTAAAACAGAGTTTAGTAATGAACTTACCTACATGCGTGGAATGGCACCAAGGAGTGCTAATTCTCCTGCTCTTGAACGTGGAGGAATGCAGGTCTTATCCAAAGAAGACACCGAGACTCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTAATGGTTGTTTTTGATCCTGTAGAAGGGTTCACTGTAGAAGCAGATAAACCCATAAAAGATTTGACAATAATAACAGAATATGTGGGAGATGTAGACTTTTTAAAGAATCGGGAAGATGATGATGGGGATAGCATTATGACACTTCTATCCCCTTCTGATCCTTCACAAATGCTAGTCATCTGCCCAGATAAACGTAGCAACATAGCACGATTCATTAATGGCATCAACAATCACACACCTGAAGGAAAAAAGAAGCAGAACTTGAAATGTGTGAGATTTAACGTTGATGGTGAATNNNNNNNNNNNNNGCCGAGTTCTATTAATTGCTAA 966 0.3954 MASPSTTLSRRRTQAPKPAPKKLSNFDDVVCEECSSGKSPTKLLLCDKCDKGYHIFCLRPILPSVPKSSWFCPSCSHNTNNPKSFPLVQTKIIDFFKIQRSIDSPQISNQDLRKKRKRGSSLVVSKKKRKLLSFVPSDDSKRRLEQMASLATALTATKTEFSNELTYMRGMAPRSANSPALERGGMQVLSKEDTETLNLCRSMMERGECPPLMVVFDPVEGFTVEADKPIKDLTIITEYVGDVDFLKNREDDDGDSIMTLLSPSDPSQMLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFNVDGEXXXXXPSSINC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03043 321 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 311 - -
Car04g03043 321 PANTHER HISTONE ACETYLTRANSFERASE 7 311 - -
Car04g03043 321 Gene3D SET domain 116 314 IPR046341 -
Car04g03043 321 Pfam PHD-finger 31 77 IPR019787 -
Car04g03043 321 ProSiteProfiles Zinc finger PHD-type profile. 28 78 IPR019787 -
Car04g03043 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 93 IPR013083 -
Car04g03043 321 CDD PHD_RSF1 31 75 - -
Car04g03043 321 SUPERFAMILY FYVE/PHD zinc finger 26 84 IPR011011 -
Car04g03043 321 ProSiteProfiles SET domain profile. 210 321 IPR001214 GO:0005515
Car04g03043 321 MobiDBLite consensus disorder prediction 1 21 - -
Car04g03043 321 ProSitePatterns Zinc finger PHD-type signature. 31 75 IPR019786 -
Car04g03043 321 SUPERFAMILY SET domain 202 285 IPR046341 -
Car04g03043 321 SMART PHD_3 30 76 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03043 Car-Chr4 58329298 58332257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03043 16 93 C2H2 Transcription Factor Family AT3G01460 28.916 3.97e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g03043 PHD 1.4e-10 CL0390