Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03033 ATGAACTTCACTGGTTTGAGTGGTCAGATTCAGTTTGACGCAGAAAAGAATCTTGTTCATCCATCATATGATATCCTTAACATCGGTGATGCGGGTTCCCGGAGGATCGGTTATTGGTCTAATTACTCTGGTCTATCAGTTTTATCTCCAGAAAATTTATACAAGAAACCTCCAAACACTTCAACAAGCAATCAAAAACTGTTTAGTGTTGTGTGGCCTGGTGAAACTACAGCTACACCAAGAGGATGGGTTTTCCCTAACAATGGAAGGCAACTGAGAATAGCAGTGCCTCATAGAATAAGCTACTTGGAGTTTGTTTCAAAGGACAAGAATCCACCTGGTGTTAGAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTTCCACGACGATATATATTATATGGAGATGGTAATAGAAATCCCAACTACAACCAGCTTGTCAATGATGTTGCACTAAATATCTATGATGCAACTGTTGGAGATATTACAATTGTCCCAAACAGAACAAGGATTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTCCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGCGTGACCGGCGCCTTTTTTCTTTTTGTGGGAATTGTTGTATGGATTCTTGAGCACAGGCACAATCCAGAGTTCCGTGGTTCGCCCAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGAAGATTTGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCAAGCTTAACATCCATCCTCACAGTACAGCAGCTTTCCTCACAAATTGAAGGAATTGATAGCTTGATATCAGTTACATTGAGAGATCCAAAGGCGTATATCGATGCTCTTATGCGTGGACCGTCAGGAGGAGGGGTTATGGCTATTGTTGATGAGCTTCCTTATATTGAACTCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGACAAGAGTTCACTAAAAGTGGTTGGGGATTTGTAAGTATCTTTGTTTGCATATCCATGGTTTTGATTCCTAAACTTTATCCATTTACTTTGATTGCAGATAGGCTTGTAATTTCATTGATAGCTGAGTTTATTCCATTGTTCAAAACACCAGGACTTTCTGTATTGTTATTGTTGGTCATGTCTCCTCAACCATCATTTAGTTGTTCATATCATCTCCAAAATGCCGCCGCTGCCTGCCCTTCTATAGCACCGCAATTCACTAACAACTCGAGAAAGTCGGAGCTGCTCGGAAAACTCACCCGGAGTTGCTCCTCGCCGGCCAGTGAATAA 1416 0.4103 MNFTGLSGQIQFDAEKNLVHPSYDILNIGDAGSRRIGYWSNYSGLSVLSPENLYKKPPNTSTSNQKLFSVVWPGETTATPRGWVFPNNGRQLRIAVPHRISYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRRYILYGDGNRNPNYNQLVNDVALNIYDATVGDITIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFLFVGIVVWILEHRHNPEFRGSPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISVTLRDPKAYIDALMRGPSGGGVMAIVDELPYIELFMSSTNCKFRTVGQEFTKSGWGFVSIFVCISMVLIPKLYPFTLIADRLVISLIAEFIPLFKTPGLSVLLLLVMSPQPSFSCSYHLQNAAAACPSIAPQFTNNSRKSELLGKLTRSCSSPASE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03033 471 Pfam Ligand-gated ion channel 212 361 IPR001320 GO:0015276|GO:0016020
Car04g03033 471 SMART GluR_14 93 386 IPR001320 GO:0015276|GO:0016020
Car04g03033 471 PANTHER GLUTAMATE RECEPTOR 1 316 - -
Car04g03033 471 Gene3D - 1 91 - -
Car04g03033 471 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 316 - -
Car04g03033 471 Gene3D - 203 323 - -
Car04g03033 471 SUPERFAMILY Periplasmic binding protein-like II 67 373 - -
Car04g03033 471 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 322 373 - -
Car04g03033 471 Pfam Ligated ion channel L-glutamate- and glycine-binding site 109 195 IPR019594 GO:0004970|GO:0016020
Car04g03033 471 Gene3D - 92 202 - -
Car04g03033 471 SUPERFAMILY Periplasmic binding protein-like I 1 84 IPR028082 -
Car04g03033 471 PANTHER GLUTAMATE RECEPTOR 322 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03033 Car-Chr4 58272820 58279466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03033 1 373 Ion Channels AT1G05200 67.332 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03033 K05387 - gmx:100799912 640.188