Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03015 ATGGAAGGCACATCCAACTTTTTCCAAACTACCTTTTGCCAACAACAACTCTCTTCCGACAACAACCAAACAAATAAcaccacttctaccaccaccaccgccgaccaATTCATCGTTGAGGACCTCCTTAACCTCTCCAACGACGATGTTATCATCGCCGAAACCAATCTAGACGCTGCCATCGGAACCTCGACCAACTCCTCCACCATCATCAATAGCTGCAACTCATCATTTTCCGGGTGTGACCACAATCTCGTACATGATATTGGTGGCCACAATCTTTCTGATTGTCATTTCTCCGGAGACCTCTGTGTTCCGAATGACGATTTAGCGGAGTTGGAATGGCTTTCAAATTTTGTGGAGGAATCATTTTCAAGTGAAGATCTCCAAAAGTTGCAACTAATTTCCGGCAAGAAAGTGGGAAGCAAGGACGAAGAGGTCCACGAGTTCTCCCAACCCAACCGAAACAACCCGATATTTAACAAAGAAGTGTCAGTTCCAGCTAAGGCTCGTAGCAAGAGAACTCGTGGCCCCCCATGCGATTGGAGCTCGCGTCTCCTTGTTTTGTCTGAGACTGCGTCGTCTTCTTCTGAGTCTGAACTCCTTATTCCAACTCCAACCTTACCATCTACCACAGTTCTCCCAAAGAAGCAGAAGACTGCTTCTAGAAGAAAGGACAATGGTGACGGAGGTTCAGGAGGAGATGGTCGTAGGTGTCTACATTGTGCAACTGATAAGACGCCACAATGGCGAACTGGGCCTAAAGGCCCAAAAACATTATGTAATGCATGTGGTGTGAGATATAAGTCAGGTCGATTGGTACCTGAATACAGGCCCGCAGCAAGTCCAACTTTTGTGCTCACAAAACACTCCAATTCACATCGTAAGGTGTTGGAGCTACGGAGACAAAAGGAAATGGTGCGGGCCCACCAGCATCATCAACACCAATTTTTACACCATCAAAATATGATTTTTGATATTTCCAACAGTGACGAATACTTGATTCACCAACCTGTGGGCCCTGATTTCAGACAACTGATCTAG 1044 0.4444 MEGTSNFFQTTFCQQQLSSDNNQTNNTTSTTTTADQFIVEDLLNLSNDDVIIAETNLDAAIGTSTNSSTIINSCNSSFSGCDHNLVHDIGGHNLSDCHFSGDLCVPNDDLAELEWLSNFVEESFSSEDLQKLQLISGKKVGSKDEEVHEFSQPNRNNPIFNKEVSVPAKARSKRTRGPPCDWSSRLLVLSETASSSSESELLIPTPTLPSTTVLPKKQKTASRRKDNGDGGSGGDGRRCLHCATDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAHQHHQHQFLHHQNMIFDISNSDEYLIHQPVGPDFRQLI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03015 347 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Car04g03015 347 MobiDBLite consensus disorder prediction 198 217 - -
Car04g03015 347 MobiDBLite consensus disorder prediction 198 239 - -
Car04g03015 347 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Car04g03015 347 PIRSF Txn_fac_GATA_plant 14 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Car04g03015 347 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Car04g03015 347 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Car04g03015 347 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Car04g03015 347 Gene3D - 233 314 IPR013088 GO:0006355|GO:0008270
Car04g03015 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
Car04g03015 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Car04g03015 347 MobiDBLite consensus disorder prediction 149 179 - -
Car04g03015 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03015 Car-Chr4 58037042 58039541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03015 37 347 C2C2-Gata Transcription Factor Family AT5G25830 53.659 1.41e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car04g03015 GATA 1.5e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03015 04 58037042 58039541 Car04g03015 04 58037042 58039541 ECH