Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03011 ATGAGAGTTTCATCACAAAATTCAGAAACCGAAAGTTGCtcaaattcatcaccaacatcaccatcaacaaactcaattcaagatcaaGAATCCGACAAAAAGACCAAACGCAACCGCGACTCTAACAAACACCCCGTGTACCGAGGTGTTCGAATGAGAAACTGGGGAAAATGGGTGTCTGAAATCCGCGAGCCTCGAAAGAAGTCGCGGATTTGGCTTGGCACTTTTCCCACAGCTGAAATGGCTGCCAGAGCGCACGATGCTGCTGCGCTCTGCGTCAAAGGAAACTCCGCCATTCTTAATTTTCCTCACCTTGCTTCTTCTCTTCCGAAACCCGCTTCTTTGACACCTCGCGACGTTCAAGCCGCAGCGGCTAAAGCAGCTCAAATGGACAACAAAATTGAattatcatcgtccacatcattatcatcgttctcatcatcgacaacgttgtcatcagcatcattgacaacgttgtcatcagcatcGACAAGTCTATTAATGAAAACATCAGTATCGATGTCTTCATCAGTAGACTTGTCGACAACTTCTGAAGAAGAATTGAGTGAGATTATAGAGCTACCCACGTTGGAAAACGGTTATGATGTTGGAAAGGAAGAGTTTGTGTTTGTTGACTCACAATCACAAGACTATTCTTGGATGTATCATCAACCAATGACGTGGCTACAAACAACAGAAGAAGATGGTTGTTGTGGTGGCGGTGGTGATCATGGGTTTGTTAATAATGACTTTGTAACTAGTTTCGAGAGTTTTCTCTGGAATTACTAG 789 0.3714 MRVSSQNSETESCSNSSPTSPSTNSIQDQESDKKTKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGNSAILNFPHLASSLPKPASLTPRDVQAAAAKAAQMDNKIELSSSTSLSSFSSSTTLSSASLTTLSSASTSLLMKTSVSMSSSVDLSTTSEEELSEIIELPTLENGYDVGKEEFVFVDSQSQDYSWMYHQPMTWLQTTEEDGCCGGGGDHGFVNNDFVTSFESFLWNY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03011 262 MobiDBLite consensus disorder prediction 29 47 - -
Car04g03011 262 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Car04g03011 262 MobiDBLite consensus disorder prediction 1 47 - -
Car04g03011 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 261 - -
Car04g03011 262 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Car04g03011 262 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Car04g03011 262 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Car04g03011 262 MobiDBLite consensus disorder prediction 1 28 - -
Car04g03011 262 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Car04g03011 262 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Car04g03011 262 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Car04g03011 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 261 - -
Car04g03011 262 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03011 Car-Chr4 57939839 57940869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03011 7 239 AP2-EREBP Transcription Factor Family AT5G11590 53.586 3.29e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g03011 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03011 K09286 - pop:7462301 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03011 04 57939839 57940869 Car04g03011 04 57939839 57940869 ECH
Car05g03103 05 75808526 75809605 Car04g03011 04 57939839 57940869 PCT