Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03008 ATGGTCAAAATTTCATTAGGAAGAATCAAAGAGGCCACTCAGCCAGATTGCATTCAAGCTCTAATTGTTGAATTCATTACCACTTTTCTATTTATCTTTGCTGGTGTTGCTTCTGCAATCACTGCCGAAAAGCTAAGTGGAGATGCATTAGTGGGATTGTTTTTTGTGGCTATAGCACAGACTCTTGTGGTGGCTGTAATGATCGGCGCCGGTGGCCACTTTAACCCCGCCGTGACTCTAGGTCTCCTTGTCGGTGGCCACATCACTATGGTCCGTTCCATTTTATATTGGATTGATCAATTAATAGCATCAGCATCAGCTTGTTATCTTCTTCATTATCTCTCTGGTGGATTGACAACTCCAGCTCAAACACTTGCAAGTGGAGTAGGGTACACACAAGGAGTAGTTTGTGGGATTGTGTTGACATTCTCTTTGTTATTCACTGTTTATGCAACCATGGTTGATCCAAAGAAGGGAGTACGTCATGGGCTTGGCCCAACTTTAGTTGGGTTTGTGGTAGGGGCTAACATTCTAGCTGGGGCTTTCTCTGGTGCTTCAATAAACCCAGCAAGATCTTTTGGGCCTGCTTTGGTTAGTGGAAATTGGACTAATCATTGGGTTTATTGGGTTGGGCCACTTATTGGTGGTGGGTTTGCTGGTTTTATTTATGAAAATTTCTTCATTTAG 687 0.4309 MVKISLGRIKEATQPDCIQALIVEFITTFLFIFAGVASAITAEKLSGDALVGLFFVAIAQTLVVAVMIGAGGHFNPAVTLGLLVGGHITMVRSILYWIDQLIASASACYLLHYLSGGLTTPAQTLASGVGYTQGVVCGIVLTFSLLFTVYATMVDPKKGVRHGLGPTLVGFVVGANILAGAFSGASINPARSFGPALVSGNWTNHWVYWVGPLIGGGFAGFIYENFFI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03008 228 PANTHER AQUAPORIN TIP4-1 2 228 - -
Car04g03008 228 Gene3D Glycerol uptake facilitator protein. 2 228 IPR023271 -
Car04g03008 228 PRINTS Major intrinsic protein family signature 55 79 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 PRINTS Major intrinsic protein family signature 137 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 PRINTS Major intrinsic protein family signature 206 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 SUPERFAMILY Aquaporin-like 11 227 IPR023271 -
Car04g03008 228 Pfam Major intrinsic protein 13 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03008 228 ProSitePatterns MIP family signature. 73 81 IPR022357 -
Car04g03008 228 PANTHER AQUAPORIN-8 2 228 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03008 Car-Chr4 57884383 57888025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03008 1 228 Major Intrinsic Protein MIP AT2G25810 72.532 1.60e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03008 K09873 - rcu:8271179 362.459