Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03007 ATGGCCAAAATCGCGTTAGGAACAACAAGAGAGGCCACTCAACCAGATTGCATTCAAGCTCTAATCGTTGAATTCATTGCCACTTTTCTCTTTGTTTTTGCTGGTGTTGGTTCTGCCATGACTGCTGATAAGCTAAGTGGAGATGCATTAGTGGGATTGTTTTTTGTGGCTATAGCACATGCTCTTGTGGTGGCTGTAATGATCTCCGCCGCTCACATTTCCGGTGGCCATTTGAATCCGGCGGTGACGCTAGGTCTCCTTGCCGGCGGCCACATCACTGTGTTCCGTTCAATTCTATATTGGATTGATCAATTAATAGCATCTGCTGCAGCTTCTTATCTTCTGTATTATCTCTCTGGTGGATTGACAACTCCAGCTCATACACTTGCAAGTGGAATAGGGTACACACAAGGTGTAGTTTGGGAGATTGTGTTGACATTCTCTTTGTTATTCACTGTTTATGCAACCATGGTTGATCCAAAGAAGGGAGCACTTAATGGGCTTGGCCCAACTTTAGTTGGGTTTGTGGTAGGGGCCAATATTCTAGCTGGTGGGGCTTTCTCTGCTGCTTCAATGAACCCAGCAAGATCTTTTGGGCCTGCTTTGGTTAGTGGAAATTGGACTGATCATTGGGTTTATTGGGTTGGGCCACTTATTGGTGGTGGGCTTGCTGGTTTCATTTATGAGAATTTCTTCATTAATAGAGATCATGTCCCTCTAGTTGTAGATGAAGAAAGTTACTAA 744 0.4435 MAKIALGTTREATQPDCIQALIVEFIATFLFVFAGVGSAMTADKLSGDALVGLFFVAIAHALVVAVMISAAHISGGHLNPAVTLGLLAGGHITVFRSILYWIDQLIASAAASYLLYYLSGGLTTPAHTLASGIGYTQGVVWEIVLTFSLLFTVYATMVDPKKGALNGLGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENFFINRDHVPLVVDEESY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03007 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PANTHER AQUAPORIN-8 2 246 IPR034294 -
Car04g03007 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Car04g03007 247 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 SUPERFAMILY Aquaporin-like 11 240 IPR023271 -
Car04g03007 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g03007 247 PANTHER AQUAPORIN TIP4-1 2 246 - -
Car04g03007 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03007 Car-Chr4 57881066 57883036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03007 1 245 Major Intrinsic Protein MIP AT2G25810 78.776 4.11e-133 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03007 K09873 - gmx:100811447 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03007 04 57881066 57883036 Car04g03007 04 57881066 57883036 ECH