Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03006 ATGGAAAAAGTCGTTGGAGGAAAGTATAAAATTGGTCGGAAAATTGGTAGTGGATCATTCGGTGTAattcatattgGAGCACATGTTGTAACTTCTGAGCTTGTGGCAATTAAGATGGAGAACAAGAAAACCAAACAACCACAGCTATTGTATGAGGCCAAGTTATATAATAATCTTAAAGGAGGAAGTGGTATTCCGCGAATGAAATGGTTTGGTACCGATGGAGACTATAATGTTCTAGTTCTTGAGCTTATGGGACCGAGTCTCGAAGACCTCCTTTACTACTCTGGGGGGATGTTTTCGCTAAAATCGGTTTTGATGTTGGCTGATCAGATGCTTACCAGGATCGAGTATTTACATTCCAAGGGATTCCTGCATAGAGATATCAAACCAGATAACTTCCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTGTATGATTGATTTTGGACTCTCAAAAGGATATAGGGATCCTATTTCATACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCACAAAGGAATTGAACAAAGTCGCAGAGATGATTTAGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGTCTTCCTTGGCAAGGTCTGCAAGCTGCCACAAGAACGCAAAAATATGAAAAACTTTGTGAAACGAAGTTATCAACTCGCATTGAGGTACTTTGCAAGGCATATCCTGTGGAGTTCGCTTCTTACTTTCATTATTGCCGCTCCTTGACATTCGATCAACGACCAGATTATGTATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGTTTCTGACTATTTATTTGACTGGACGATTTTAAAATATCAGCAGATGCAACAGACAAAGGCACAAAGTCAACCAACTGCCCCCGTTGCTGTGCTTAGCATTCTTGAACCAGTGGATGTTGATCAGCATCAAGAAGTCAATGGTTGTACTCAAAATGATGTGGCAAAACCAACAATCTATTCCAATCGTCCACGTGTTTGTATGAAACTCAGGGTATCTAATGCTGATAATTTTGATGATGAGAATGAGATTCAAACAGAAAAACAAAATGTGAATACTAGTTCACCTATTTCCACTGCCATGCCAATAGTCTCTACCGAAAATGTCCCAAAACAGGAAAGGACTGTAGAAACCTTAAACGCGGATCGCGTGTTAGAGAGTAAATGTGGTGCTTTAGGTAACTTTGTTCCTTCGCTACGCCGAGTTTCATCCTTCAAATAG 1287 0.3947 MEKVVGGKYKIGRKIGSGSFGVIHIGAHVVTSELVAIKMENKKTKQPQLLYEAKLYNNLKGGSGIPRMKWFGTDGDYNVLVLELMGPSLEDLLYYSGGMFSLKSVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRTQKYEKLCETKLSTRIEVLCKAYPVEFASYFHYCRSLTFDQRPDYVYLKRLFRELFTSKGYVSDYLFDWTILKYQQMQQTKAQSQPTAPVAVLSILEPVDVDQHQEVNGCTQNDVAKPTIYSNRPRVCMKLRVSNADNFDDENEIQTEKQNVNTSSPISTAMPIVSTENVPKQERTVETLNADRVLESKCGALGNFVPSLRRVSSFK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03006 428 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03006 428 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 407 - -
Car04g03006 428 Pfam Protein kinase domain 9 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03006 428 PANTHER CASEIN KINASE-RELATED 1 407 - -
Car04g03006 428 Gene3D Transferase(Phosphotransferase) domain 1 1 329 - -
Car04g03006 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Car04g03006 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Car04g03006 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Car04g03006 428 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03006 Car-Chr4 57862684 57869517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03006 8 213 MAP Kinase Kinase Kinase AT1G54960 27.064 2.92e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Car04g03006 Pkinase 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03006 K08960 - gmx:100782913 598.586