Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02998 ATGGACGGTGACCGAAAAATCGCCGTTCCTCCAGTGGATGGGCCCACTGATGGTGTTCAGAAAATTAGAGCATTGCACGGGAGGACTACTGGCCCCACAAGGCGTTCTACAAAAGGGCAATGGACTCCTGAGGAGGATGAGACATTGCGGAAGGCTGTTCAGCGTTTCAAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACAGATGTGCAGTGCTTACATAGGTGGCAGAAAGTGTTGAATCCCGAACTTGTTAAAGGGCCATGGTCTAAAGAGGAAGATGAAGTGATGATTGAATTGGTAAACAAATATGGGCCTACAAAGTGGTCAACTATTGCACAACATTTACCTGGGCGTATTGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGACTCTAATACGTGCTCATCAGATCTATGGGAACAAATGGGCAGAATTAACAAAGTTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCAGTCAAAAAGAAATTGGATTCTTACATGGCATCAGGCTTGCTTACTCAGTTGCAATCTGTACCTCATGGTGGAAATCCAAGTCAATCAATGGTTACAACATCTTCAAGGTCGCAAGGTAACGGAGAAGATAATGGTCTTCAAGGGACCGAAGGAGATGAAGTTTTAGAGTGTAGCCATGATTCAGCTAATGCTCTCCACTTCCCATCCTCCAGAGAGATGACAGGTGCTGACTTGCAAACTGTTGAGGGGTTTAAGCCAAATGAAGAATGTAGTCTTGGGACAGGTCGTAGTCCAAGTCAAGCATCCTGTTCTGAGCCATATTATGTATCTATTGATGACGTTACTATATGCATCCCAGAAACTGCTCATCATGAAGCATGTTCTTCTGAATTCATTGAACAATACTCACATGAACCTGGAAATTCCATGAATGAGGATTGTCAGTTTAATTTACATTCCTTACCCAATATTTCATCAATGGACTTGGGGGAGGAATCCTCACAGTTGCAAAGAGATGGTACAGATCCTAGTGGAGTACGTGACTTGGTGAATGTTCCATATCAGACTTCAGCGGGATTAGCTGTTTCAACGCCCATGGAATCTACATCTATGGGTTCTGCTAAACCTGAGCATATGTTGATATCTGATGACGAATGTTGCAGAGTCCTGTTTTCAGAGGCAAATAATGATGAATGTTTTTTCCCTGGAGATTATAATAAAGGTGTTGATACTATTGAATTTAATGGACACACTGCATATGTTTGTCAATCATGTCATATTCAGATATCCGAAACTGGTGGAACCTCAACTATGCAGTTAACTTGTCCTCAGTGTTCTAATAATTTTAAAGGAATGTCATTTTCTCAATCCACCCAACCATTACATTCTACTAATGATAGTGGGCGTGAGTGTCAACAGTTTGTCTCCAGAGCACCCGATAACTTCACTTATGCCAATGACATGTCCAGCTCTCCTTGTGTTGATGCTACAGAGAGTTCAGTAATGCAAGAGCCATCAGATATTCTGAAGGATAGTTTTATCCGTGGACCAGATGTTAAGCAAACCTGTTATCCAACAGATGAAAAGCCTAACGTGGGCACAAATAAGGAGGACGAGAGAGCTCTATGTTATGAACCTCCCCGTTATCCAAGCTTGGATGTTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCCCTTGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTGACTCCGTTAAGGCTGTGGGACTCGCCTGCTCGCGATGATAGTCCAGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTACGGGTACACCATCAATATTAAAGAAACGACGCCGAGATTTGTTATCACCACTTTCAGATAAAAGAATTGGCAAGAAACTTGAGACCGACATGGCATCCTCTTTGGCCAAAGCCTTTTCCAGTTTGGAAGCAGATATACTTTCTCCCTCTTTATTACAAAAGCCAAACTCCGGGGCTTCTGGTTTTGATGACGATAAAGAGAATTGTGAACAAGCTTATAAAGGCAAACAAGTAGAAGAGGCTGTTAAATCTTCTGCAATTTTGGAAGAAAAACAGTCAGATGCACTTGACAGTAATTCTCATGGTAAAGTTAGGCAGCAACCTTTTGATGTTGATTCTAAAATGAAGATTGATGCTGCTGAGATTATGCTACAATCTTCTGGGGTTTTGTCTGAACATGATATGAATGACCTGTCATTATATTCATCTGATAAAGTTGGTTTTAGAGATAGAGTTCTGGGCTCTAGTGATGGAACTCCCAGAAACTTGAACAATAGGAGCTCGGAAATAGCTTTGAACCAGAGTGTCCCTTCAAAATTATCTTCTGAGAAGTCATGCTCAAGGATTAGCACTCCTTGCATTCGTGCGAAGGAGCATGAAAATCTAACAGTTTCTGTTGCTCGTGTAAAAGCTCCAGGGGAGAATTCAGAGGATCAAAGTAGAAATGACGGTGGTTATGAAACATGTAGCATGTTTGGTGGAACACCTTTCAGGAAAGGTATTGAATCACCTTCTGCATGGAAATCTCCCTGGCTCAGGAATACGTTTCTCTGTAGCCCCAGTTTTGATAAAGAAATTACAATTGAGGATTTTGGATTTTTCAAGAGCCCGGGAGGTGATAGAAGCTACGATGCTATCGGGTTGTTAAAACAGATTGGCGATCAAACTGTTGCTACATATGAAAATGCACAGGAGAATTTGAAAAATGAAACTCCTAAGGCATTACCTAAAGATGCAACTGGTGACCAGGGAAATAACAGCCCTAGCAATCAGCCTGCAAACAATTCTAAATTATCTTCAAATGCTATGCTTAATGGGATTTTTTCCCATCAGGTGGAACGACGCATGCTTGACTTTAGTGAATGTGGAACACCGGAAAAGGGTGATAGCAGCAAATCCTCAGCGAGTCAGCTATGA 3036 0.4167 MDGDRKIAVPPVDGPTDGVQKIRALHGRTTGPTRRSTKGQWTPEEDETLRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVMIELVNKYGPTKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELTLIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYMASGLLTQLQSVPHGGNPSQSMVTTSSRSQGNGEDNGLQGTEGDEVLECSHDSANALHFPSSREMTGADLQTVEGFKPNEECSLGTGRSPSQASCSEPYYVSIDDVTICIPETAHHEACSSEFIEQYSHEPGNSMNEDCQFNLHSLPNISSMDLGEESSQLQRDGTDPSGVRDLVNVPYQTSAGLAVSTPMESTSMGSAKPEHMLISDDECCRVLFSEANNDECFFPGDYNKGVDTIEFNGHTAYVCQSCHIQISETGGTSTMQLTCPQCSNNFKGMSFSQSTQPLHSTNDSGRECQQFVSRAPDNFTYANDMSSSPCVDATESSVMQEPSDILKDSFIRGPDVKQTCYPTDEKPNVGTNKEDERALCYEPPRYPSLDVPFFSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPLRLWDSPARDDSPEALLKSAAKTFTGTPSILKKRRRDLLSPLSDKRIGKKLETDMASSLAKAFSSLEADILSPSLLQKPNSGASGFDDDKENCEQAYKGKQVEEAVKSSAILEEKQSDALDSNSHGKVRQQPFDVDSKMKIDAAEIMLQSSGVLSEHDMNDLSLYSSDKVGFRDRVLGSSDGTPRNLNNRSSEIALNQSVPSKLSSEKSCSRISTPCIRAKEHENLTVSVARVKAPGENSEDQSRNDGGYETCSMFGGTPFRKGIESPSAWKSPWLRNTFLCSPSFDKEITIEDFGFFKSPGGDRSYDAIGLLKQIGDQTVATYENAQENLKNETPKALPKDATGDQGNNSPSNQPANNSKLSSNAMLNGIFSHQVERRMLDFSECGTPEKGDSSKSSASQL 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02998 1011 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 140 IPR017930 -
Car04g02998 1011 CDD SANT 41 84 IPR001005 -
Car04g02998 1011 SUPERFAMILY Homeodomain-like 36 99 IPR009057 -
Car04g02998 1011 PANTHER MYB PROTEIN-RELATED 10 1003 - -
Car04g02998 1011 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Car04g02998 1011 MobiDBLite consensus disorder prediction 937 977 - -
Car04g02998 1011 ProSiteProfiles Myb-like domain profile. 85 136 IPR001005 -
Car04g02998 1011 Gene3D - 143 205 - -
Car04g02998 1011 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Car04g02998 1011 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Car04g02998 1011 CDD SANT 92 136 IPR001005 -
Car04g02998 1011 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 191 IPR017930 -
Car04g02998 1011 Gene3D - 37 89 - -
Car04g02998 1011 MobiDBLite consensus disorder prediction 203 236 - -
Car04g02998 1011 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Car04g02998 1011 Pfam Myb-like DNA-binding domain 38 84 IPR001005 -
Car04g02998 1011 Pfam Myb-like DNA-binding domain 142 184 IPR001005 -
Car04g02998 1011 Gene3D - 90 141 - -
Car04g02998 1011 MobiDBLite consensus disorder prediction 203 231 - -
Car04g02998 1011 MobiDBLite consensus disorder prediction 953 977 - -
Car04g02998 1011 PANTHER TRANSCRIPTION REPRESSOR MYB5 10 1003 - -
Car04g02998 1011 MobiDBLite consensus disorder prediction 991 1011 - -
Car04g02998 1011 CDD SANT 144 184 IPR001005 -
Car04g02998 1011 SUPERFAMILY Homeodomain-like 87 183 IPR009057 -
Car04g02998 1011 SMART sant 141 189 IPR001005 -
Car04g02998 1011 SMART sant 89 138 IPR001005 -
Car04g02998 1011 SMART sant 37 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02998 Car-Chr4 57726006 57735819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02998 5 1001 MYB Transcription Factor Family AT4G32730 41.154 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g02998 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02998 - K09420 aprc:113848458 1358.97