Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02981 ATGATGAAAATACAAGCTTCATATTCATGTTCATCATATCTACACAAACTAGTATCAACATTTGTTTCAATCCTTCTCCTTTTTCATCAACATTCTCTAGCTAAGCATCACCAACCATGTCCCATTTCAACATGTGGCAAAATTCACAACATAACGTACCCATTTCGTCTCAAAACCGATCCAAACCACTGCGGCGACTCAAGGTACGAATTAGATTGCAAAAAAGACGGTCCATTATTAACTATGTTCACAGGTAAATACTATGTACAACACATTGATTACAAAAGAAATAAAATTTTATTAAGTGATGCGGGTGCAGTGGAAGACGCAAATTGTTCTTTCATCCCACGGTATTTTTTATACGACCGAAGTTTCAATAACATACTTAACGAAGATGAGTTTGGATCTCAGCCGTTCATTTTAGATCCAACAGATCCAACGAGGATAGCTTATTACAATTGTTTAAATCCAATTGAAGATCCACGGTACGTTAAGGTGGACACGAGTCGTTGTAACAAACCAGGGTATAAATGGAATAATAATGTTTATGCTGTTTTGGAACCATCATTGTATGAGTATCATGTTAGGGATATTAAGGTTGGGTGTGATTTTATGGTGGCTACTTTGGCTAAACCAAGGGGTAATTTGGAGATTTCGATGGAGGGTAATTTTTCGTATGGTGAGATTCATGGGATGGTGATTGGTGGAGTTGAGGTTTCGTGGTTGCCTTTGATTTGTGAAGATAGATGTGGAAAGGGGATAAGTTGTAAGGTTGTTGATGAAGATAGTGGAGAAGTTGAATGTGATAAGCACTTTTGTCATTATGCTTACCAAACAACCGATAAGTGCGAACTTCAGCAGCAGATATTTGGTTATACTCGTGCTTATCTTAGAGGCATTTTTATTGGATTTAGAAGTAGAATCACATTCAGCACAAGACAATTGGACAACCCAGTTGGACTACAATATTTTGATGGAGGAATATTCATAGGAAGAAATGTTCTACCAATATTCTTAGCAGCCAGATTTCTATTTGGAGTTGTTCTTTTACTTGTGCTATTTATTTACAAATGGAGAAGAAGACATTTATCAATGTATCACAACATTGAAAACTTTTTGCTAGAGAGCAATCTAAAtcccattaggtatgaatacaaagaaatcaagaagatgactggaggtttaagagtgaaattgggtcaaggtggttttggcgctgtatacaaaggaaagttaagaagtggtccagatgttgcaataaagatgttgacgaaatccaatgttaataatggacaagattttattaatgaagttgctaccatcggaagaatacatcatgttaatgtagttcgtcttgttggatattgtgttgaggggaaaaagagcgcacttgtttatgaattcatgcctaatgggtcattggataaatacattttccctaaagaaggaactgacccattgagttacgagaaaatatatgaaatatctcttggaatagctcgtgggatagcgtatctacatcaaggttgtgatatgcaaattctacattttgatatcaagcctcataatattcttctagatgaagacttcgttccaaaggtttcggattttggacttgcaaagttgtatcctgtgaatgatagcattgtcccattaactgcagcaagaggaactttgggttacatggctcctgaattgttctacaaaaatattggtggagtgtcttacaaggctgatgtatatagctttggaatgcttttgatggaaatggcaggtaagaggaaaaactcaaatcctcacgcagagcattcaagtcagcattacttcccattttggatttatgatcaatttaaagaagagaaagatattgaaataatgaaagatgtctcagaagagggaattaatgtagctaaaaagatgtttatggttgcactttggtgtattcagttgaaaccaagtgatcgtccttcaatgaacaaagtagtggagatgcttgaagggaaaactgaaaaccttgaacttcctccaagaccttcttttTATCCAAATGAAACTTATAGAAATCATGATGATATCAACTCTGACCATACATCATGGAGTGATTCCAGTAGTACTAGCCAAGCCACAACTAATTATTCATTGGACAATTGA 2151 0.2092 MMKIQASYSCSSYLHKLVSTFVSILLLFHQHSLAKHHQPCPISTCGKIHNITYPFRLKTDPNHCGDSRYELDCKKDGPLLTMFTGKYYVQHIDYKRNKILLSDAGAVEDANCSFIPRYFLYDRSFNNILNEDEFGSQPFILDPTDPTRIAYYNCLNPIEDPRYVKVDTSRCNKPGYKWNNNVYAVLEPSLYEYHVRDIKVGCDFMVATLAKPRGNLEISMEGNFSYGEIHGMVIGGVEVSWLPLICEDRCGKGISCKVVDEDSGEVECDKHFCHYAYQTTDKCELQQQIFGYTRAYLRGIFIGFRSRITFSTRQLDNPVGLQYFDGGIFIGRNVLPIFLAARFLFGVVLLLVLFIYKWRRRHLSMYHNIENFLLESNLNPIRYEYKEIKKMTGGLRVKLGQGGFGAVYKGKLRSGPDVAIKMLTKSNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALVYEFMPNGSLDKYIFPKEGTDPLSYEKIYEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNSNPHAEHSSQHYFPFWIYDQFKEEKDIEIMKDVSEEGINVAKKMFMVALWCIQLKPSDRPSMNKVVEMLEGKTENLELPPRPSFYPNETYRNHDDINSDHTSWSDSSSTSQATTNYSLDN 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02981 716 SMART serkin_6 393 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02981 716 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 696 IPR045874 GO:0004672
Car04g02981 716 Pfam Protein kinase domain 398 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02981 716 Gene3D Transferase(Phosphotransferase) domain 1 469 674 - -
Car04g02981 716 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Car04g02981 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Car04g02981 716 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Car04g02981 716 MobiDBLite consensus disorder prediction 697 716 - -
Car04g02981 716 CDD STKc_IRAK 399 667 - -
Car04g02981 716 ProSiteProfiles Protein kinase domain profile. 393 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02981 716 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 2 696 - -
Car04g02981 716 MobiDBLite consensus disorder prediction 675 716 - -
Car04g02981 716 SUPERFAMILY Protein kinase-like (PK-like) 385 701 IPR011009 -
Car04g02981 716 Gene3D Phosphorylase Kinase; domain 1 370 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02981 Car-Chr4 57197306 57200047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02981 332 715 Receptor kinase-like Gene Family AT4G18250 43.622 9.34e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Car04g02981 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02981 - - lja:Lj0g3v0275229.4 1004.2