Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02963 ATGGAAACTCAAAAGGTTCCAATAGATGATGAGAGTTTATTACTATCTGATATTTTCAGTAATGCAGAGTTTGGTGGTGGAGAAGATCTTTTTTCCATTTTGGAAAATGTTGTTCCTCCCAACTCAACAACGTCTTCATTAAGTGATCCTCCACAAGATTATGAAACTGAAACATCATTCAAATGCAAGAGACAAAAAATTGCATTAACTTCAATTGAGGAACAAAACAACGATGGACAACATAGATCCATGTCGCATATTGCGGTCGAGCGCAATCGAAGGAAGCAAATGAATGAACAATTGTCGATTTTGAGGTCACTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAATTGAAGGAGTAGTTGATTACATAAACGAGTTACATCAACTACTACAATGCCTAGAAACCAAGAAACAAAGAAAAGTTTACAATGAAGTTCTAAGTCCAAGGCTATTAATTCAAAGTCCAAGAATTTCACCACTAAGTCCTAGAAAAATAATACCTATTAGTAGTCCAAAAACTCCACAACCATGGTTGCAACCATgtggtggtggtggtggtTATCTTTCATCTCCTACTTCTTCAGCTAATTCTTCCATCAATGACAACATAAATGAACTTGTTGCAAATTCCAAGTCTTCAATTGCTGATGTTGAGGTTAAGTTTTCTGGTCCACATGTGCTTTTGAAAACTATTTCGTCACGAATTCCAGGACAAGCTATGAGAATAATATCCGCTCTTGAAGATCTAGCACTTGAAATCGTTCATCTTAGTGTTAGTACTGCTGATGAAACCATGCTAAACTCGTTCACTATTAAGATTGGAATTGAATGCCAACTAAGTGCCGAGGAACTCGCTCAACAAATCCAGCAAACATTCTGTTAG 900 0.3578 METQKVPIDDESLLLSDIFSNAEFGGGEDLFSILENVVPPNSTTSSLSDPPQDYETETSFKCKRQKIALTSIEEQNNDGQHRSMSHIAVERNRRKQMNEQLSILRSLMPCFYVKRGDQASIIEGVVDYINELHQLLQCLETKKQRKVYNEVLSPRLLIQSPRISPLSPRKIIPISSPKTPQPWLQPCGGGGGYLSSPTSSANSSINDNINELVANSKSSIADVEVKFSGPHVLLKTISSRIPGQAMRIISALEDLALEIVHLSVSTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02963 299 SMART finulus 87 138 IPR011598 GO:0046983
Car04g02963 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Car04g02963 299 PANTHER TRANSCRIPTION FACTOR FAMA 44 299 IPR044283 GO:0003700|GO:0010052
Car04g02963 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 149 IPR036638 GO:0046983
Car04g02963 299 CDD bHLH_AtFAMA_like 84 155 - -
Car04g02963 299 Pfam Helix-loop-helix DNA-binding domain 83 132 IPR011598 GO:0046983
Car04g02963 299 Gene3D - 72 147 IPR036638 GO:0046983
Car04g02963 299 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 44 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02963 Car-Chr4 56920086 56922629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02963 84 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 44.037 2.07e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g02963 HLH 5.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02963 K20558 - gmx:100809717 350.132