Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02960 ATGGAAAAGAGTATCCTATGTAAAAAAACTGTTCACGAAACTATTACAAAGAAGTTCAAAAAACCAAAGAGAAACTCCAATGCACAGTGTAGCAACAACAAAATTTCAATTCCAATAAAATTACCAAAAGTGATTCGAGTAACTGTCACTGATCCGGATGCTACTGATTCATCAAGCGACGAGGAAGACAATTTATGGCTTCCTCGCAGAAGAATAAAGCGTTACGTTAGTCAAATTGAAACTGAGACCGTCGCTTCAACGACGGTCTCTGGTAAAAAGAGGTCTGAAAGAGAAACGAATTCAAAACCTCGGCCGGCAAAGATGCCGGCCGTGGTTAATGGAGATATGATAAAGTTCCGCGGTGTTCGGATGAGACCGTGGGGAAAATGGGCGGCTGAGATTAGAGATCCGATTGCTCGGGTCCGGTTATGGTTGGGAACTTTCAATACTGCCGAAGAAGCAGCTAAGAGGTACGACGCTGCCGCGGTTAAGCTTCGTGGTGAAGCCGCCGTTACAAATTTTGCTGCCACACCGGAGAAGGAGAAGGAAGAAAAAATGGAAGTAGTTATTAACACGGAGATGTCTGGTTCCGGTGAAGATTCCGGCGACGATTTTCGTAATCTTTCATCGCCGACTTCTGTTCTACGGTCCAGACCTGATGAAATTTGCCAAATTAGTGAACCGGTCGAACCGGTAAGAGAAAGTGAACCGGTCGAGCCGTTTGAAGAATGTGAAGGTGAAACGAGGTGGTTCGATGAGAGTAATGAGTTTTTCCGACATGAAATGGATGATGTGTTCAATTTTGCAACGACTTCAGATTGTTATTACTCGAATATGTTTTTTGATGAAGCTCCTTTGAGTTTGTTTCATGAAACGACACCGGTTGTGGTTAATGAGTGTCGTTTAAGTGATCACGTGGAAATTGATAAAACGCACTCACCATCAACTTTATGCCAAGTGGATGATTTTTTTGATGACATTTTGTTAGGTTCAGATCCTCTTGTCGTGCTATGA 1014 0.43 MEKSILCKKTVHETITKKFKKPKRNSNAQCSNNKISIPIKLPKVIRVTVTDPDATDSSSDEEDNLWLPRRRIKRYVSQIETETVASTTVSGKKRSERETNSKPRPAKMPAVVNGDMIKFRGVRMRPWGKWAAEIRDPIARVRLWLGTFNTAEEAAKRYDAAAVKLRGEAAVTNFAATPEKEKEEKMEVVINTEMSGSGEDSGDDFRNLSSPTSVLRSRPDEICQISEPVEPVRESEPVEPFEECEGETRWFDESNEFFRHEMDDVFNFATTSDCYYSNMFFDEAPLSLFHETTPVVVNECRLSDHVEIDKTHSPSTLCQVDDFFDDILLGSDPLVVL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02960 337 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Car04g02960 337 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Car04g02960 337 SUPERFAMILY DNA-binding domain 118 175 IPR016177 GO:0003677
Car04g02960 337 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Car04g02960 337 MobiDBLite consensus disorder prediction 194 214 - -
Car04g02960 337 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Car04g02960 337 MobiDBLite consensus disorder prediction 83 109 - -
Car04g02960 337 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Car04g02960 337 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Car04g02960 337 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 223 - -
Car04g02960 337 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Car04g02960 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 6 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02960 Car-Chr4 56877779 56879468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02960 7 282 AP2-EREBP Transcription Factor Family AT4G27950 39.344 3.36e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g02960 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02960 - - lang:109327510 278.87