Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02955 ATGGAGCATGGAAGCCCCTCCTCTAACCATAGCCGTAAGGCACAATCAAGCTCTGGAAGTGAGAAACTGCGTATGCCCGTTACGCATCTGACAAGAATCATGCAGCGAGCTATTCCTGCGCAGGCTAAAATTTCCAATGGTGCTAAGGAATCAATGCAATTTTGTGTCTCTGAATTCATCACCATTATCACTACTGAGGCTAGCGAGCGTTGCAAGTTTGAGCATCGCAAAATTGTTACCGCTGAAGATTTAATTTGGGCTATGGATAAGTTGGGCTTTGAGGACTATACTGGACCTCTTGTTTTTTACCTTGATAACTATCGTAAAAATGAGGCCCAGTTCACTGCCATGGCAATTGCCCATGGGCTCAACAAGGATGCATCCAACAGTGGCAGTGGTAATGACCAACCTTGA 414 0.4541 MEHGSPSSNHSRKAQSSSGSEKLRMPVTHLTRIMQRAIPAQAKISNGAKESMQFCVSEFITIITTEASERCKFEHRKIVTAEDLIWAMDKLGFEDYTGPLVFYLDNYRKNEAQFTAMAIAHGLNKDASNSGSGNDQP 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02955 137 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 12 118 - -
Car04g02955 137 SUPERFAMILY Histone-fold 22 113 IPR009072 GO:0046982
Car04g02955 137 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car04g02955 137 MobiDBLite consensus disorder prediction 1 22 - -
Car04g02955 137 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Car04g02955 137 Gene3D Histone, subunit A 10 136 IPR009072 GO:0046982
Car04g02955 137 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Car04g02955 137 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Car04g02955 137 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02955 Car-Chr4 56793263 56795142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02955 7 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 46.552 5.15e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car04g02955 CBFD_NFYB_HMF 3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02955 K08065 - gmx:100810059 124.405