Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02928 ATGGATGGTGTCAAAGTACTTGCCTCTGGCTTTGATGCGGACGAGAAGGTCAAGATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTACACACTAAGCTGTCATCAGATTTGAACTTTGTCATCGTGAAAAATGTTTTGGCTCTGAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGCGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTGACTGGAATCCCAGCAGATAAGCGCAAAGAGATGGAAAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACAAAGAAATATGTTATTGAGGTTTTAACATGGTGTATTATGTATATTTGTGTTCTTGACTGTTCTTACGCTCCAGAAGGTGATAAATATAAGGTGGCTAAACGTTGGGGCCACATTCATATTGTGACAATGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAAGAGTCCTACCCTGTTCAGAATGGATCTTTATCTTCTCGTAGAGTGACTAGGGACTTAACAGTGCAACATAGCCAGGAAAAGGATATTGGGAAAAGGCACTCTGTGTCATCCTCAAGAGCTGCAGATTCAAATATGCTAGTTTCAGATTGCGCCGAGTCTATGGATATAGATCCAGAAGCTACACAGTCAGAACATATGTCGTCTGTTTCAAATGTTCCATTTGTTAAACATCCAGATGCTGGAGCACCTCCATTACAGACCAGCAATGAATTGAATTTAGATGGTCTTGTTGCGAATGATTCTGAATCTGATGACAGTGACCTGTACTTAGCGGAGTGCAGAATATTTCTTGTTGGTTTTGAAGCTTCTGAAATGCGGAAGCTAGTTAATATGGTGCGCAAAGGTGGAGGCTCCCGATACATGTCTTTTAATGACAAACTGACACACATAGTAATTGGGAATCCTACAGAAATAGAAAAGAAAGATGTAAGGAGTATTGCTGCTCTAGGTGTCGTTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAGGAAACAAGTTCCGGTTCTTCGGCGACACATTGCATGCGATCTACTTCTTCCAAAAGCCAACTTAATAAAAGGAGCAGTGACTGGCATTATGCCTATGGATCAATTTACAAGCTCAAGTTTTCGTCAAAGCCTCCAGGCTGATCCGGTGGTGGGTAATAAGGACTTTGGAGTTAAAATGTCAGAATCATTGGAGAAAAACAAAGAAGAGAAACATGATATGGGTATGAATGTTGTCACATTCGGTAAAGCAATGGATAGAACTATGCCGCAAACTCAACTTCCTGATAATAAATTGAGGGTACAAAAGATGATGCAACAGGACTCCAATGCACATGTGAAGTCAACAAATATTTTCAAAGGGAAAACATTTTGTTTCTCGAATTTATTTCCTGAAGAAAGGAGAGACGAGATTGGTCAATGGATAAGTCAAGGGGGAGGAGAGATAATTAGTGGGCAAACAAAACAGAGTATCCACTATACTATTGCATGTCATGGTGTAAAACCCAGCTTGACAGGAGATTATGGAAGTACCTATATTTCCAGTCACTGGATACGATCTTGTTTGGTGGATGGATCCTTGCTGGATGTTGACAGTCATATTCTTTATTCGCCACTTCCCTGCTGTGTTCCCTTGCCTGGTTTTGAAAGCCTCCGGTTTTGTGTTTCACAATATGAAGAGAAAGATAGAGTTCTTCTTAAGAACTTGTGTATAGTTCTAGGAGCTAAATTTGCTTTGAAGTTGACTAAGAAGGTCACCCATTTGCTGTGTAAATTCACCAATGGGCCCAAGTACGAGGCTGCTTGTAAGTGGGGTATCCGATCAGTTACCTCTGACTGGATATTTGAATGTGTCAAACAGAACGGAGTTATTGCCATTGATAAATTTTTGCCCAAAGAAGTCACCCCTCAAGACCAAGAGGCAGGAATTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACATACCCTCCCAGTTTCCAAGTCAATCGCAAAGTTCAAGAAACACGGCAAATAAAAATGTAGATAGTGGACTCGACAATCATGAGACTCATTCTAAAATATCAAATATTAATAGCAAAAAGGCAAGGCTCATGGTAGAACCTGATCTGTATAGTAAGGCGCCTGCTACAGTAAGTTCAGATTCAGGTATTCATGTCTATAACTTGAATTTTTCTGAGAAAAATACACTCAAAGATGCTCTGGAGGTTACCCATGCTGTTCCAGATGTTGCTGCTGCAATTGAGGACTTATTAAATGATGATAAGTTAATGATGCATGGTCAGAGGTCCCCAGTGAGTACAGGGTGTGAGAGAAGTGTATCCATTAAGTGTGATCAATTTAATGGAGTCGTTTGTGAAGACAATCCAAATCCTCATACTGTCTTTGGATTATCGAAGCACTGGTTAAACAGAAATGGCAGAAAAGATGATCATGAATCTCAGGTTGTTAGTTATGAAGAAGATTTGTCGGGAAGGCAAATGCTTATAGATAGAGTTCGAACTCGAAATAAACTCAGCCTTTGCCTGCTAATAGCGGAAACTTACGTAGCAGGGGTGTATGAATAG 2679 0.402 MDGVKVLASGFDADEKVKIEELVTEMGGALHTKLSSDLNFVIVKNVLALKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADKRKEMEKLILQNGGKYSAELTKKYVIEVLTWCIMYICVLDCSYAPEGDKYKVAKRWGHIHIVTMKWFDQSIARRACLNEESYPVQNGSLSSRRVTRDLTVQHSQEKDIGKRHSVSSSRAADSNMLVSDCAESMDIDPEATQSEHMSSVSNVPFVKHPDAGAPPLQTSNELNLDGLVANDSESDDSDLYLAECRIFLVGFEASEMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEIEKKDVRSIAALGVVYVVKTSWLEDCDRERKQVPVLRRHIACDLLLPKANLIKGAVTGIMPMDQFTSSSFRQSLQADPVVGNKDFGVKMSESLEKNKEEKHDMGMNVVTFGKAMDRTMPQTQLPDNKLRVQKMMQQDSNAHVKSTNIFKGKTFCFSNLFPEERRDEIGQWISQGGGEIISGQTKQSIHYTIACHGVKPSLTGDYGSTYISSHWIRSCLVDGSLLDVDSHILYSPLPCCVPLPGFESLRFCVSQYEEKDRVLLKNLCIVLGAKFALKLTKKVTHLLCKFTNGPKYEAACKWGIRSVTSDWIFECVKQNGVIAIDKFLPKEVTPQDQEAGICTVSQFPTQAVRMINDIPSQFPSQSQSSRNTANKNVDSGLDNHETHSKISNINSKKARLMVEPDLYSKAPATVSSDSGIHVYNLNFSEKNTLKDALEVTHAVPDVAAAIEDLLNDDKLMMHGQRSPVSTGCERSVSIKCDQFNGVVCEDNPNPHTVFGLSKHWLNRNGRKDDHESQVVSYEEDLSGRQMLIDRVRTRNKLSLCLLIAETYVAGVYE 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02928 892 CDD BRCT 4 71 - -
Car04g02928 892 ProSiteProfiles BRCT domain profile. 285 377 IPR001357 -
Car04g02928 892 SUPERFAMILY BRCT domain 285 371 IPR036420 -
Car04g02928 892 MobiDBLite consensus disorder prediction 201 222 - -
Car04g02928 892 CDD BRCT_TopBP1_rpt2_like 87 175 - -
Car04g02928 892 ProSiteProfiles BRCT domain profile. 581 664 IPR001357 -
Car04g02928 892 Pfam BRCT domain, a BRCA1 C-terminus domain 482 565 IPR001357 -
Car04g02928 892 SUPERFAMILY BRCT domain 483 570 IPR036420 -
Car04g02928 892 MobiDBLite consensus disorder prediction 695 727 - -
Car04g02928 892 Gene3D BRCT domain 87 188 IPR036420 -
Car04g02928 892 Pfam twin BRCT domain 5 67 IPR001357 -
Car04g02928 892 Pfam twin BRCT domain 584 646 IPR001357 -
Car04g02928 892 Pfam twin BRCT domain 91 167 IPR001357 -
Car04g02928 892 Gene3D BRCT domain 1 86 IPR036420 -
Car04g02928 892 MobiDBLite consensus disorder prediction 239 264 - -
Car04g02928 892 SMART BRCT_7 287 367 IPR001357 -
Car04g02928 892 SMART BRCT_7 1 75 IPR001357 -
Car04g02928 892 SMART BRCT_7 85 175 IPR001357 -
Car04g02928 892 SMART BRCT_7 482 558 IPR001357 -
Car04g02928 892 SMART BRCT_7 578 654 IPR001357 -
Car04g02928 892 ProSiteProfiles BRCT domain profile. 480 568 IPR001357 -
Car04g02928 892 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 1 852 - -
Car04g02928 892 Gene3D BRCT domain 575 667 IPR036420 -
Car04g02928 892 SUPERFAMILY BRCT domain 1 85 IPR036420 -
Car04g02928 892 Gene3D BRCT domain 477 574 IPR036420 -
Car04g02928 892 SUPERFAMILY BRCT domain 87 186 IPR036420 -
Car04g02928 892 Gene3D BRCT domain 274 374 IPR036420 -
Car04g02928 892 ProSiteProfiles BRCT domain profile. 83 185 IPR001357 -
Car04g02928 892 SUPERFAMILY BRCT domain 577 665 IPR036420 -
Car04g02928 892 CDD BRCT_TopBP1_rpt2_like 579 654 - -
Car04g02928 892 MobiDBLite consensus disorder prediction 695 714 - -
Car04g02928 892 MobiDBLite consensus disorder prediction 201 215 - -
Car04g02928 892 ProSiteProfiles BRCT domain profile. 1 85 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02928 1 877 Core DNA Replication Machinery Family AT1G77320 45.745 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02928 K10728 - gmx:100804966 1182.16