LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g02925	ATGTCAGTGCTGATCGTGACGAGTTTAGGGGACTTGGTGATCGATTTGCATACTCAAAAATGTCCTTTAACCTGCAAGAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGCTGCTTATTTCACACTGTTCAAAAGGATTTCACTGCTCAGACTGGCGATCCAACTGGAACTGCCGCCGGTGGTGATTCTATCTACAAGTATCTTTATGGTGATCAAGCTCGGTTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCAAGTGCGGGAGAGAATATGAATGCTTCACAGTTCTATATAACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCATACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATAAATGAGGCTTATGCAGATGAAAAGGGAAGGCCATTTAAAAATATCAGAATCAAGCACACTTACATCCTGGAGGATCCTTATGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGCTTCACCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCGCATTCTAGGGCAGTCGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAACCTCCAGATAATGTACTATTTGTCTGTAAGTTGAATCCTGTTACTGAGGACGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGCGATCACAAGACTGGTGACAGTTTGTGCTATGCTTTTATAGAGTTTGACGACAAACAGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCATTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTGCAAAACTGTGGTCACAATACATGCGGAAAGATAATAAGGGTGGTGGTTGCTTCAAATGCGGTAGCACAGATCATATTGCCAGGGATTGCACTGGAGATGCTATTATGAAACAACCCACAAAATTCATCTTGAAGGACAATAATGCCCAGCGAGGTGGCGATAAAGCGAGCTATGAAATGGTTTTTGATGGAGATAACACTGAAAGTCCAAGAAGACAAACGAAACACCAAAGACATGACAGGGATGCCCAAGATGATAAAAATGGTAGGAAGGAAAATTTTAAAAATGACAGTCATAGAGGCCGTAGGGATCAGGGGATGGCAGGCTCAAATAGCAGAGAAAGGTATGGCGATAGAAGCAGAGGGCTTGAAGAAAATGGAGATGATAAAACACGACTTGAAAGAGGTGCAAGAGATTCAGATTCTCATGTTGATAAGAAAGACAGAGAAAGGCATATGGGAAGACATAGAGATGATGAATACCGACGGAAAGATGAGCTAGACACAAGAAAAAGAGACTTAGATAGTAGCTACACAGAAAGACGGGCTAGTCGAGATGATAGCATAAAAACAGATGCTAGCCATTTGGATAGGAGGAATGACAGAGATTACAGGAAGAGAACTGAAGACAGTGGAAGGCAAAATGTGAAGATTGATTCTGGAAGAAGAAAACGAAGCCCAGATGATGAGGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATGTGAAGATTGATTCTGGACGAAGAAAACGAAGCCCAGATAATGGGGATTACAGACATAGAAAAGACGATGAGGATTACAAACGTAGAAAGGAAGACCGCGGACATAGAAGACATGATACTGAATCCGATGACTATCATAGAAGGCATCATGGTGACAGAAGGTAA	1863	0.4128	MSVLIVTSLGDLVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTAAGGDSIYKYLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENMNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADEKGRPFKNIRIKHTYILEDPYDDPPQLPEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFDDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDAIMKQPTKFILKDNNAQRGGDKASYEMVFDGDNTESPRRQTKHQRHDRDAQDDKNGRKENFKNDSHRGRRDQGMAGSNSRERYGDRSRGLEENGDDKTRLERGARDSDSHVDKKDRERHMGRHRDDEYRRKDELDTRKRDLDSSYTERRASRDDSIKTDASHLDRRNDRDYRKRTEDSGRQNVKIDSGRRKRSPDDEDYKRRRNDEDYREDVKIDSGRRKRSPDNGDYRHRKDDEDYKRRKEDRGHRRHDTESDDYHRRHHGDRR	620

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g02925	620	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	245	315	IPR000504	GO:0003723
	Car04g02925	620	SUPERFAMILY	RNA-binding domain, RBD	229	331	IPR035979	GO:0003676
	Car04g02925	620	MobiDBLite	consensus disorder prediction	387	620	-	-
	Car04g02925	620	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	4	159	IPR002130	GO:0000413\|GO:0003755
	Car04g02925	620	SUPERFAMILY	Cyclophilin-like	1	176	IPR029000	-
	Car04g02925	620	ProSiteProfiles	Zinc finger CCHC-type profile.	339	352	IPR001878	GO:0003676\|GO:0008270
	Car04g02925	620	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	243	321	IPR000504	GO:0003723
	Car04g02925	620	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	16	31	IPR002130	GO:0000413\|GO:0003755
	Car04g02925	620	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	42	54	IPR002130	GO:0000413\|GO:0003755
	Car04g02925	620	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	92	107	IPR002130	GO:0000413\|GO:0003755

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g02925	7	166	U-box Gene Family	AT5G67530	41.250	2.36e-31	127

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g02925	K12735		-	gmx:100776900	951.429

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