Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02906 ATGCCTCGGTCACGCTCAATTCAAAACGAGAGGCCATATGTTTGTAGCCTTGAAGATTGTAATGCAAGTTACAGAAGAAAAGATCATCTGAATCGTCACCTTCTACAGCATAAGGGGAAAACTTTTAAATGTCCTATAGAGAATTGTAAAAGTGACTTCTCGTTGCAAAGCAATTTGAAAAGACATATTGATGAGATTCATGATGAGAATTCTACGTCTGTTAGTAGTGAAAATCAGAAGCAGTTTGTATGTCCAGAAATTGGTTGTGGAAAGGTTTTCAGATATGCATCACAGCTACAGAAGCACGAAGATTCTCATGTTAAGCTGGAGACGATTGATGTGGTGTGCTTAGAGCCTGGCTGCATGAAACATTTCACTAATGCCGAGTGCCTTAAAGCTCATGTTAAGTCATGCCATCAACACATGACCTGTGAAACTTGTGGGAGTAAACAATTGAAGAAGAACATGAAGAGGCATCTTCGCACACACGAAGCCAGCAGTCCATCCAAAGTATTTCAATGTGAATTTGAGGGTTGTGACTGCACATTCTCAACTGTAAGATGCCTCCGATCATTAAATGGCATGATATACATGCTACATGAATTCCAAATTATTGGTTACATTTTCTAA 630 0.3921 MPRSRSIQNERPYVCSLEDCNASYRRKDHLNRHLLQHKGKTFKCPIENCKSDFSLQSNLKRHIDEIHDENSTSVSSENQKQFVCPEIGCGKVFRYASQLQKHEDSHVKLETIDVVCLEPGCMKHFTNAECLKAHVKSCHQHMTCETCGSKQLKKNMKRHLRTHEASSPSKVFQCEFEGCDCTFSTVRCLRSLNGMIYMLHEFQIIGYIF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02906 209 Gene3D Classic Zinc Finger 3 37 - -
Car04g02906 209 ProSitePatterns Zinc finger C2H2 type domain signature. 44 67 IPR013087 -
Car04g02906 209 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Car04g02906 209 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 4 189 - -
Car04g02906 209 ProSitePatterns Zinc finger C2H2 type domain signature. 84 106 IPR013087 -
Car04g02906 209 PANTHER ZINC FINGER PROTEIN 4 189 - -
Car04g02906 209 Gene3D Classic Zinc Finger 38 78 - -
Car04g02906 209 SMART c2h2final6 114 139 IPR013087 -
Car04g02906 209 SMART c2h2final6 142 163 IPR013087 -
Car04g02906 209 SMART c2h2final6 13 37 IPR013087 -
Car04g02906 209 SMART c2h2final6 82 106 IPR013087 -
Car04g02906 209 SMART c2h2final6 42 67 IPR013087 -
Car04g02906 209 Pfam Zinc finger, C2H2 type 13 37 IPR013087 -
Car04g02906 209 Pfam Zinc finger, C2H2 type 82 106 IPR013087 -
Car04g02906 209 Pfam Zinc finger, C2H2 type 42 67 IPR013087 -
Car04g02906 209 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Car04g02906 209 ProSitePatterns Zinc finger C2H2 type domain signature. 116 139 IPR013087 -
Car04g02906 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 111 IPR013087 -
Car04g02906 209 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Car04g02906 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Car04g02906 209 Gene3D Classic Zinc Finger 79 143 - -
Car04g02906 209 SUPERFAMILY beta-beta-alpha zinc fingers 8 39 IPR036236 -
Car04g02906 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 72 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02906 10 190 C2H2 Transcription Factor Family AT1G72050 48.927 1.47e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02906 zf-C2H2 0.0069 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02906 K09191 - gmx:100801812 297.745