Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02882 ATGAATAtgtggttgttgttgttgttgttcatggtttactttgttgttgtAATAACACCAACAGTAACTAATTGTCCAGATTCTTCATCATGCGGAAACCAAGTTATTAAGTTCCCTTTCCAAATTAAAAACCACTATCCAACAATTTCACCCTTATGTAGCTACCCAGCCTTTGATTTTGATTTATTTTGTTCATCAAATAACGAAACTATGATTGAACTCCCTCACAAAATAAAACTATATGTCAAAAATATTAACTACAAACACCAAACTATTCAACTATATGATCCACAAAATTGTCTTTACAAACAAATCCACAATCTCAATCTTTCAACCTCTCATTTCAAGTACTTAAAAAACAACCATGATGATTTTGTTGATAATTATCACTTTTTCAATTGTTCAGTTTTGATTAGAAATGAGTTATATTTGTATTTAGTTAGTTGTTTAAGCACATCAACCTCTCAAATATATGCTATACCTTCTAGTACTCTTGTCGATAACCTTCCACTCACTTTTTGCACCAAAATGTTTAATGTTTCATTCAATTCTTTTGGTTTTGTTCCAGATAAAAACATCATTCGTTTGATGTGGTCTGAGCCTAATTGTAAACATTGTGAATCAAAGGGAAAAAGATGTGGCTTGAATAATACTGCCAGCAAGGAAGTGTATTGTTTCCACAAAAACAAACAAGGTTCATCAACTGCTCTAGTCACCACAGGTTCAATTCTAGGATCATTGTTTTTTATCTTGCTGACTGGTGCAATCTACCATATTTATGACTCTTACATATTGAAGAAAGAAAAAGAAGCAATTATAGAAAAGTTTTTGAAAGACTATAGAGCTcttaagcccactagatactcttatatagaaattaagagaatcacaaataattttggggacaagttaggacaaggagcttatggtaatgtgtataaaggaaacatttccaaagaatttattgttgctgtgaagatactaaatgtttctctaggaaatgggcaagacttcctcaatgaagttggtacaatgggtagaatccaccatgttaacattgttagattgatcggtttttgtgccgatggctttaaaagagctcttatttatgagtttttgccaaatggttcgttgcagaagttcataaattcaccggaaaacaagaaaaacttccttggttggaaaaagttgcacgaagttgctttaggaatagctaaaggaattgagtatcttcatcaaggttgtgatcaacgcattctccatttcgatatcaaaccacaaaatgtgttacttgaccataattttattccaaaaatttgtgatttcggtctagctaaattatgttcaagggatcaaagcgtagtgtcaatgaccgcagctagaggaactttgggctacattgctcccgaagttttttcaaggaacttcggaaaggtgtcttacaaatcagatgtttatagttatggaatgatgttgcttgaaacaataggagggaggaagatcacagaggacttggaggaaaacactagtcatgttcactatccagaatggatttataatcttttagatgatcaagatgaaatgagaattcatgttgatgatgaagaggatgcaaaagttgcaagaaaaatggctactgtgggactttggtgcattcagtggcatgctatggacagaccatcaatgcaaatggtgattcaaatgtttgagggagatgtagaCAAAACTCCAATACCTCCCAATCCTTTTGCTTCTCAAACTAGACGACCTAGGAGAAATGGTGCAATTGCAACTACTAGACAACTAACCCAAGATTTAGATATAATTGAAGAGGTAGATTGA 1842 0.1612 MNMWLLLLLFMVYFVVVITPTVTNCPDSSSCGNQVIKFPFQIKNHYPTISPLCSYPAFDFDLFCSSNNETMIELPHKIKLYVKNINYKHQTIQLYDPQNCLYKQIHNLNLSTSHFKYLKNNHDDFVDNYHFFNCSVLIRNELYLYLVSCLSTSTSQIYAIPSSTLVDNLPLTFCTKMFNVSFNSFGFVPDKNIIRLMWSEPNCKHCESKGKRCGLNNTASKEVYCFHKNKQGSSTALVTTGSILGSLFFILLTGAIYHIYDSYILKKEKEAIIEKFLKDYRALKPTRYSYIEIKRITNNFGDKLGQGAYGNVYKGNISKEFIVAVKILNVSLGNGQDFLNEVGTMGRIHHVNIVRLIGFCADGFKRALIYEFLPNGSLQKFINSPENKKNFLGWKKLHEVALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFIPKICDFGLAKLCSRDQSVVSMTAARGTLGYIAPEVFSRNFGKVSYKSDVYSYGMMLLETIGGRKITEDLEENTSHVHYPEWIYNLLDDQDEMRIHVDDEEDAKVARKMATVGLWCIQWHAMDRPSMQMVIQMFEGDVDKTPIPPNPFASQTRRPRRNGAIATTRQLTQDLDIIEEVD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02882 613 Pfam Wall-associated receptor kinase galacturonan-binding 25 96 IPR025287 GO:0030247
Car04g02882 613 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 611 IPR045874 GO:0004672
Car04g02882 613 ProSiteProfiles Protein kinase domain profile. 298 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02882 613 SUPERFAMILY Protein kinase-like (PK-like) 282 569 IPR011009 -
Car04g02882 613 Gene3D Transferase(Phosphotransferase) domain 1 373 576 - -
Car04g02882 613 Gene3D Phosphorylase Kinase; domain 1 273 372 - -
Car04g02882 613 Pfam Protein kinase domain 301 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02882 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Car04g02882 613 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Car04g02882 613 PANTHER RECEPTOR-LIKE KINASE 24 611 - -
Car04g02882 613 SMART serkin_6 298 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02882 Car-Chr4 55710658 55713348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02882 1 586 Receptor kinase-like Gene Family AT1G66910 35.484 1.29e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Car04g02882 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02882 - - mtr:MTR_1g031540 952.97