Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02878 ATGGATAATAATATTCTTGGTCTTCTCAAACTTCGTATTAAAAGAGGTATTGATCTTGCAATTCGTGATACCAATTCTAGTGATCCTTATGTTGTTGTCAACATGGGTGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAACTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCTATAAGGGATGTTAAAACTCCAATACATTTGACAGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTAATGCAGATGTAGACTTGAAACCATATGTTGAATGTGTACAAATGAAGTTGTCCTCTCTCCCAAATGGTTGTGCAATTAAGAGGATTATACCAAATAGGACTAATTGCCTTGCTGAAGAGAGTAGTTGTGTTTGGAAAAATGGAAGCATTGTCCAAGAAATGATTCTAAGATTGAAAAATGTTGAGAGTGGAGAACTTGTTGTGGAAATTGAGTGGGTGGATGTTCCTGGTTGTAGAGGTCTATTAGGTATACAACTTTAA 516 0.3624 MDNNILGLLKLRIKRGIDLAIRDTNSSDPYVVVNMGEQKLKTRVVKNNCNPEWNEELTLSIRDVKTPIHLTVYDKDTFSVDDKMGNADVDLKPYVECVQMKLSSLPNGCAIKRIIPNRTNCLAEESSCVWKNGSIVQEMILRLKNVESGELVVEIEWVDVPGCRGLLGIQL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02878 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 159 IPR035892 -
Car04g02878 171 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Car04g02878 171 Pfam C2 domain 8 93 IPR000008 -
Car04g02878 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 4 164 - -
Car04g02878 171 CDD C2_ArfGAP 6 149 - -
Car04g02878 171 SMART C2_3c 8 103 IPR000008 -
Car04g02878 171 Gene3D C2 domain 3 163 IPR035892 -
Car04g02878 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 164 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02878 Car-Chr4 55669877 55671700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02878 39 166 C2H2 Transcription Factor Family AT1G70790 68.462 2.48e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02878 - - gmx:100788395 293.508