Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02870 ATGAGCAAACCCAACCATTTCTTTCACAAACTTCTAAAACCCTTTATCACAAGAGAGGAAAAGAGTGAAGATGACATACAAAACATGGCTACACAGGAGCGGAGGACATTTTCCTACGAAACATTGGTTGCTGCTACCAACAACTTTCATGCGGTTAACAAACTTGGAGAAGGAGGCTTTGGGCCTGTCTTCAAGGGTAAATTGAACGATGGGAGAGAGATAGCAGTGAAGAAGTTGTCACGTGGTTCAAATCAAGGGAAGACACAGTTTGTGACGGAGGCAAAGTTGTTGACTCGTGTGCAGCACCGTAATGTGGTGAATTTGTTTGGTTATTGTATCCATGGCAGAGAGAAGCTTCTTGTGTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGTTTCTATTCAGATCAAACAAGAGAGAAGAGCTAGATTGGAAACGTAGACTTGACATAATCAATGGAGTAGCAAGGGGATTACTTTATCTTCATGAAGACTCTCACAATTGCATAATCCATCGTGACATAAAAGCAGCCAACATTTTACTCGACGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTCCCGGAAGATGAAACCCATGTCAATACACGTGTGGCTGGAACACATGGATACATGGCGCCAGAGTACTTGATGCATGGGCATCTATCTGTGAAGGCAGACGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATCACCGGCCATCGGAACTCCTCCTCTGATTCAGCCTTCAACGGAGACAATCTCCTTAATTGGGCATACAGGCTATACAAGAAAGGGAAGTGGTTAGAAATGGTGGACCCAACGATGGCATCTTCGGTGGACGAGCAAGTGGAAACGTGCATACGAGTGAGTTTGCTGTGTGTGCAAGGAGATCCACAGCTTCGTCCAACGATGGGGCGTGTGGTGTTGATGTTATCTAAGAAGCCACCAAGTCACATGGAAGAACCAACCAGACCAGGAGTACCTGGTTCCAGATACAGAAGAATATTACCTCGGACTCGCACCCCTTTtattactactactactactGATGATGATAATGATTCATCTGCTTCACACATTGATTCAAGCAATTTTGACactaatactactaatattactacttctaccaattctacAAGCTCTGCTTCTGCACAAGTAGACTTGCGAGGGAAACGTCCAATGCTACCTTGA 1212 0.4307 MSKPNHFFHKLLKPFITREEKSEDDIQNMATQERRTFSYETLVAATNNFHAVNKLGEGGFGPVFKGKLNDGREIAVKKLSRGSNQGKTQFVTEAKLLTRVQHRNVVNLFGYCIHGREKLLVYEYVPRESLDKFLFRSNKREELDWKRRLDIINGVARGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDSAFNGDNLLNWAYRLYKKGKWLEMVDPTMASSVDEQVETCIRVSLLCVQGDPQLRPTMGRVVLMLSKKPPSHMEEPTRPGVPGSRYRRILPRTRTPFITTTTTDDDNDSSASHIDSSNFDTNTTNITTSTNSTSSASAQVDLRGKRPMLP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02870 403 MobiDBLite consensus disorder prediction 347 393 - -
Car04g02870 403 MobiDBLite consensus disorder prediction 347 403 - -
Car04g02870 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Car04g02870 403 ProSiteProfiles Protein kinase domain profile. 49 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02870 403 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 371 - -
Car04g02870 403 PANTHER RECEPTOR-LIKE KINASE 3 371 - -
Car04g02870 403 Gene3D Transferase(Phosphotransferase) domain 1 125 330 - -
Car04g02870 403 SMART serkin_6 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02870 403 SUPERFAMILY Protein kinase-like (PK-like) 33 339 IPR011009 -
Car04g02870 403 Pfam Protein tyrosine and serine/threonine kinase 51 314 IPR001245 GO:0004672|GO:0006468
Car04g02870 403 Gene3D Phosphorylase Kinase; domain 1 13 124 - -
Car04g02870 403 CDD STKc_IRAK 55 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02870 Car-Chr4 55582491 55591735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02870 13 333 Receptor kinase-like Gene Family AT4G11530 50.765 2.64e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car04g02870 PK_Tyr_Ser-Thr 7.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02870 - - mtr:MTR_1g031780 659.833