Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02846 ATGTACCAAACTCTATTCACTATTCCTATGAAGGAAATGAGTAATATAACCCGCGCGCGATTCATAAAGCGCTTTTCCGAAACTTCCAATTTACCAATTTCTTCTTCTTCCCAAGCTCAGCGATGTCTACACGGACCACCCCCGCAACAGAAGTACCGGAGTCCCACGCGCCTCTACTCCGTCCACGCCATGAAGGCGGGCGCGGTCCCACCCTCGCGCTGCTACTTGGACGCGCCACCGGACGCAGAGGACCGTCGGTGCTTGTACGAGAAACGGCGGCGCGTGAACTCGAAGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGTCGTGCTGACTGGGGATACTCAAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTTATAGTCTCGGCGGCGATACTGTTATGCACCGTTGACGAGCGTCCGAACACGCCGATCAGGGTTTGGATCATCGGCTACGCGCTGCAGTGTTTCGTTCACGTTGTTCTGGTGTGGCTCGAGTACCACCGCCGTAGCCGGAGGGATTCACGGCGGCGACAGAGAGCTAGTGACGCTGAAACTAGCTCCGACGGAAACGATAGCGACGACGGCGATGAGAACTCGTCTCAGTCCAGATTCACAAAGCGATGCGAATCAATAAATACTGGCGTTTCATTCTTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGACATCCTTCTGCAAGGTGCTCCACGCTTGTACTGGTTGGCCGTTGTCTTCCTGGCATTTGATGTCTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCAGTTGCAGGACAGGAAGGTGCTTCAGAAGCAGATCTTAGTATACTTCCAAAATACAGATTTCAAATAGTAAGCAATGAGGAAAAGGCTAGTGGTGGAGCTGGATCAATGGTTCCCATAGAAACCACCAGTGGATACTTGGCCAATGAACGAATGCTTTTACCTGAGGATGCGGAATGCTGTATATGCCTTTGTCCATATGAGGATGGAACAGAGCTCCATACTCTTCCTTGCAACCATCATTTCCATTCTTCTTGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCACTTTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATAA 1299 0.455 MYQTLFTIPMKEMSNITRARFIKRFSETSNLPISSSSQAQRCLHGPPPQQKYRSPTRLYSVHAMKAGAVPPSRCYLDAPPDAEDRRCLYEKRRRVNSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRADWGYSKPVVALDMSWNMAFVIVSAAILLCTVDERPNTPIRVWIIGYALQCFVHVVLVWLEYHRRSRRDSRRRQRASDAETSSDGNDSDDGDENSSQSRFTKRCESINTGVSFFWWMVGFYWVVSGGDILLQGAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIVSNEEKASGGAGSMVPIETTSGYLANERMLLPEDAECCICLCPYEDGTELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02846 432 Pfam Ring finger domain 380 422 IPR001841 -
Car04g02846 432 SMART ring_2 381 421 IPR001841 -
Car04g02846 432 MobiDBLite consensus disorder prediction 216 240 - -
Car04g02846 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 427 IPR013083 -
Car04g02846 432 ProSiteProfiles Zinc finger RING-type profile. 381 422 IPR001841 -
Car04g02846 432 PANTHER TARGET OF ERK KINASE MPK-1 141 432 - -
Car04g02846 432 SUPERFAMILY RING/U-box 370 426 - -
Car04g02846 432 CDD RING-H2_PA-TM-RING 380 422 - -
Car04g02846 432 Coils Coil 142 143 - -
Car04g02846 432 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 141 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02846 Car-Chr4 55256047 55262650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02846 142 431 C3H Transcription Factor Family AT1G68070 69.655 1.50e-153 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02846 - K13148 aip:107643865 483.796