LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g02834	ATGGTTTCAAGATCTTATTCAAATCTAGTAGAGTTAGCTTCTGGTGAGGCACCATCATTTGGTTTAATGAACAGAAGAATTCCAAGGATTATGACAGTTGCTGGATTGATATCTGATGTTGTTGTTGTTGATGATGATCAAGTGGAAAGTGTTTCCTCTGATTTCTCATCATCTTCGGTTCACCGTGACCGGATCATAATAGTGGCTAATCAGCTTCCTATTAAGGCTCAAAAGAATCAAGATGGCAACAGAAATTGTTGGTCTTTTTGTTGGGATGAGAATTCACTACTTCAATTGAAAGATGGATTAGGTGATGATGATATTGAGGTTATTTATGTTGGTTGCTTAAAGGAAGATGTTAATCCAAATGAGCAAGATGAGGTTTCACAGATTCTTCTTGAGAATTTCAAGTGTGTTCCTGTTTTTCTTCCACCTGATATGTTTACAAGATACTATCATGGTTTTTGCAAACAACAATTATGGCCACTTTTTCATTATATGTTGCCTTTGTCACCGGAACTTGGTGGTAGGTTTAATAGGTCTTTGTGGCAAGCGTATGTATCTGTTAATAAGATTTTTGCTGATAGGATTATGGAAGTTATTAACCCTGAAGATGATTATGTGTGGATACATGATTATCATTTGATGGTGTTGCCAACTTTCTTGAGGAAGAGGTTTAATAGGGTGAAACTTGGATTCTTTCTTCATAGTCCGTTCCCTTCATCGGAGATTTATAAAACGTTGCCTATTAGGGAAGAGCTTTTGAGAGCTTTACTTAATTCGGATTTGATCGGGTTCCATACTTTCGATTATGCGCGGCATTTTCTCTCGTGTTGTAGTCGGATGCTAGGTCTTACGTATGAATCGAAGCGAGGCTATATTGGGCTTGAGTATTATGGTAGGACTGTTAATATCAAGATTCTTCCTGTTGGTATACACATGGGTCAGATTCAATCGGTTTTAAGGCTGCGAGAGACCGAGGAAAAAGTTTGCGAGCTTATTAGACAGTTTTCTGATCAAGGGAGGACAATGTTGCTTGGTGTAGATGACATGGATATATTTAAGGGAATAAGTTTGAAGCTTTTGGCAATGGAACAACTTCTAATTCAGCATCCAGAGTATCAAGGAAAAGTGGTATTGGTTCAGATAGCGAATCCTGCTAGGGGACGAGGGAAAGACGTGAAAGAAATGCAAGATGAGACGAAGGCGACGGTGAAACGGATCAATGAAACGTTCGGAAAACCAGGGTATGATCCTGTTATTCTGATTGAGGAGGCACTGAAGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCCGAGTGTTGTTTAGTCACCGCGGTAAGAGATGGAATGAATCTCATACCGTACGAATACATAGTTGGTCGTCAAGGAAATGAAACATTGGATAAAGTTTTGGGGATAGGTTCCTTCCCTAAAAAGAAAAGCATGTTAGTTGTGTCCGAGTTCATTGGATGTTCACCGTCTCTAAGTGGAGCAATCCGAGTGAACCCATGGAATGTTGATGCTGTGGCGGATGCAATGGACTCGGCTTTGGGAATGGCTGATTCGGAAAAACAGCTAAGACATGAAAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTATTGGGCTCGTAGCTTCTTACAGGATTTGGAAAGGGCTTGTAGTGATCATGTACGGCGAAGATGGTGGGGAATCGGGTTTGGATTGAGTTTTAAAGTTGTTGCACTTGATCCAAACTTTAGGAAGCTCTCAATGGATCATATAGTTTCGGCGTACAAGCGGACAACAAGTAGAGCCATCCTTCTCGACTATGATGGTACATTAATGCCTCAAGTTTCCATTGATAAGAGCCCAACAGGTAAATCCATTGAAAGTCTTAATAGCTTGTGTAGAGATAAGAACAACGTCGTGTTTCTTGTTAGTGCCAGAAGCCGAAAGACgctttccgaatggttttctccttgtgaaaatatgggaattgcagctgagcatggttactttctaagAATGAAGCGAGACGACGAATGGGAAACTTGTGTTCCTGCAACAGATTGCAGTtggaaacaaattgcagagccggtaatgaaactttataccgaaacaactgatggatcaacaattgaagataaggaaactgcacttgtttggtggtatgaagatgcagatccagattttggatcatgccaagctaaggaacttcttgatcatcttgagagtgtgcttgcaaatgaaccagttactgttaaaagtggtcagaattatgtagaggttaaaccacagggtgtgagcaagggattagtggcgaaacgcctactttcatcaatgcaagaaaagggaaagtcacctgattttgttttatgtataggagatgacaggtcggacgaagatatgttcgaggtaatcacgagttcgatgcacggtccaatagcaccgaaggctgaagtgttcgcttgcaccgtttgtcggaaaccgagtaaggctaagtactatctagatgatactgctgaaattgtgagattgattcaaggattagcttgtgtttcAGATAAAAAAGTTTTATGCTAA	2571	0.3147	MVSRSYSNLVELASGEAPSFGLMNRRIPRIMTVAGLISDVVVVDDDQVESVSSDFSSSSVHRDRIIIVANQLPIKAQKNQDGNRNCWSFCWDENSLLQLKDGLGDDDIEVIYVGCLKEDVNPNEQDEVSQILLENFKCVPVFLPPDMFTRYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVNIKILPVGIHMGQIQSVLRLRETEEKVCELIRQFSDQGRTMLLGVDDMDIFKGISLKLLAMEQLLIQHPEYQGKVVLVQIANPARGRGKDVKEMQDETKATVKRINETFGKPGYDPVILIEEALKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIVGRQGNETLDKVLGIGSFPKKKSMLVVSEFIGCSPSLSGAIRVNPWNVDAVADAMDSALGMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERACSDHVRRRWWGIGFGLSFKVVALDPNFRKLSMDHIVSAYKRTTSRAILLDYDGTLMPQVSIDKSPTGKSIESLNSLCRDKNNVVFLVSARSRKTLSEWFSPCENMGIAAEHGYFLRMKRDDEWETCVPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWWYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNYVEVKPQGVSKGLVAKRLLSSMQEKGKSPDFVLCIGDDRSDEDMFEVITSSMHGPIAPKAEVFACTVCRKPSKAKYYLDDTAEIVRLIQGLACVSDKKVLC	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g02834	856	Gene3D	Glycogen Phosphorylase B;	56	318	-	-
	Car04g02834	856	CDD	HAD_TPP	601	841	-	-
	Car04g02834	856	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	63	556	-	-
	Car04g02834	856	Pfam	Glycosyltransferase family 20	64	553	IPR001830	GO:0003824\|GO:0005992
	Car04g02834	856	Pfam	Trehalose-phosphatase	603	836	IPR003337	GO:0003824\|GO:0005992
	Car04g02834	856	CDD	GT20_TPS	64	553	IPR001830	GO:0003824\|GO:0005992
	Car04g02834	856	Gene3D	-	599	715	IPR023214	-
	Car04g02834	856	Gene3D	-	729	854	IPR023214	-
	Car04g02834	856	SUPERFAMILY	HAD-like	600	847	IPR036412	-
	Car04g02834	856	TIGRFAM	T6PP: trehalose-phosphatase	600	846	IPR003337	GO:0003824\|GO:0005992
	Car04g02834	856	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	602	803	IPR006379	-
	Car04g02834	856	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	853	-	-
	Car04g02834	856	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	853	IPR001830	GO:0003824\|GO:0005992
	Car04g02834	856	Gene3D	Glycogen Phosphorylase B;	319	537	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g02834	Car-Chr4	55080657	55084692	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g02834	1	852	Trehalose Biosynthesis Gene Families	AT1G68020	80.600	0.0	1440

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g02834	K16055		-	gmx:100818822	1526.53