Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02818 ATGATTTGTGTCAGGTATCTTGAGTGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGCGGGGAACAACATATTTTCCCTGTCTCTTCTTCTTCTTCATGCAGGGATACAATGTTTTCACATTCAAGAATAAAGGCTTGTGATCTTCTTTCACAACTTAACACTTCCATATCAACAGATTCTGGGATTCATGCACAAACTCTATTAGCAAACCAACCCAATTGGTTGAACTATCCCAATACCTTGGATCCAAACACTTTACAAGCAATACTAATTTTGCAGGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTTGGTGAAGATCAACAGGTACTAGATTTTATCACATCACAGTGCATTGTGTTGGTTGATCAAGAAGGGATGAATAACTCAATTGGCTTCAATTCAATGAGCAACATGCAATCAAATCAAGTTGTATGTGATGAAAATGATGGAAACAATAAAACAAACAATCATTTCCATCCATCAGATAGTTTGAGTCTTCCACCTCATGATCACATATCTGTAATGAACTTCATGCAacaattcaattacaattacaattacaattacaatCAACAAAACAACAGAATGAGAAATGATGAAACCTTTTCATACCAAGGCCAAGGTTCATTCTTTCATGATCATGAAAACAGCAACAACAATCTTGTAAAACCCAATACAGAAGAGGAACATGAGCATAAAAGCTTGATGACAGAAGAGCAGTATGTGTTTGTGAATCCATTAGACTCAAAAAAGAATCAAGAAGAAGAAGAGAAGGATTTGATGAAACATGTTGTTGGTAGATCAGATTCCATGTCAGATTGCAGTGATCAAAATGAAGAAGAGGAGGATGGAAAATATAGGAGAAGAAATGGGAAAGGAAACCAATCAAAGAACCTTGTAGCAGAGAGAAAGAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATATCAAAGCTAGATAGAGCTTCGATTCTTGGTGATGCTATTGAGTATGTGAAGGATTTGCAGAAACAAGTGAAAGAGCTACAAGATGATCTTGAAGAAAATTCAGACACAACAACTGAAAGTAACTGTGTGATTAATAATCAATATGTGAATGGTATTCAAGTTGAAGCAGATAATAAAAATGTTAGAAAAGCAGAACATGGTTATCATGTTGTTGGGAATGGTAATGAGAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCATAGGGCTGGTGGGTTTGTGAAATTGATGGAAGCATTGAATAGTTTAGGCATGGATGTATTACATGCCACAGTGACCAGTCACAAGGGTCTTGTGTCAAATGTCTTTAAAGTAGAGAAAAAGGAGAGTGAGATAGTTGAGGCTGAAGATGTAAGAGAATCACTTATAGAGCTGACGAGGAATAGATAG 1524 0.3668 MICVRYLEWLGCCCGGSESNQNGGEQHIFPVSSSSSCRDTMFSHSRIKACDLLSQLNTSISTDSGIHAQTLLANQPNWLNYPNTLDPNTLQAILILQETINGTHVLIPVPGGLVELFVTKQVGEDQQVLDFITSQCIVLVDQEGMNNSIGFNSMSNMQSNQVVCDENDGNNKTNNHFHPSDSLSLPPHDHISVMNFMQQFNYNYNYNYNQQNNRMRNDETFSYQGQGSFFHDHENSNNNLVKPNTEEEHEHKSLMTEEQYVFVNPLDSKKNQEEEEKDLMKHVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDDLEENSDTTTESNCVINNQYVNGIQVEADNKNVRKAEHGYHVVGNGNEKQTQQMEAQVEVAQIDGNEYFVKVFCEHRAGGFVKLMEALNSLGMDVLHATVTSHKGLVSNVFKVEKKESEIVEAEDVRESLIELTRNR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02818 507 ProSiteProfiles ACT domain profile. 439 507 IPR002912 -
Car04g02818 507 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 67 506 - -
Car04g02818 507 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 134 IPR025610 -
Car04g02818 507 SMART finulus 318 367 IPR011598 GO:0046983
Car04g02818 507 MobiDBLite consensus disorder prediction 233 323 - -
Car04g02818 507 CDD ACT_UUR-ACR-like 440 503 - -
Car04g02818 507 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 67 506 - -
Car04g02818 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 376 IPR036638 GO:0046983
Car04g02818 507 Pfam Helix-loop-helix DNA-binding domain 319 362 IPR011598 GO:0046983
Car04g02818 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Car04g02818 507 MobiDBLite consensus disorder prediction 268 285 - -
Car04g02818 507 Gene3D - 300 377 IPR036638 GO:0046983
Car04g02818 507 Coils Coil 351 378 - -
Car04g02818 507 CDD bHLH_AtAMS_like 315 384 - -
Car04g02818 507 Coils Coil 483 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02818 Car-Chr4 54751462 54772817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02818 5 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 45.698 1.90e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g02818 bHLH-MYC_N 8.5e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02818 - - aprc:113871920 616.69