Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02778 ATGGATCCTTGTAAGCACACTGTTGGAGCAGGAGGAATGGATATACCTATCATGCATGAGAGTGATAGGTATGAGCTTGTTCGTGATATTGGGTCTGGTAATTTTGGGGTGGCTAGGCTTATGAGAGATAAGCAAACTGATCAACTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCACTAAGGCATCCCAATATTGTCAGGTTCAAGGAGGTGATACTTACTCCTACACATTTAGCTATTGTGATGGAATATGCTTCTGGTGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGTGAGGATGAGGCACGCTTTTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGTGATTTGAAGTTGGAGAACACGTTGTTGGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGCGATTTTGGTTATTCAAAGTTCTCAGTGCTACATTCACAACCAAAATCTACGGTTGGTACCCCTGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCGTTCGAGGATCCGGAGGAGCCTAAAAATTTCCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATTCCTGACTATGTTCAAATATCTCCCGAGTGCCGTCATCTGATATCAAGAATCTTCGTTGCAGACCCTGCTCAGAGAATAAGTATTCCCGAGATTAGAAACCATGAGTGGTTTTTGAAGAACCTTCCAGCTGATCTCATCGTCGGGAATACTACGAACGATCAGTTTCAAGAGCCAGAGCAACCAATGCAAAGCGTTGAAGAAATCATGCAGATAATTAGCGAGGCTACTATTCCTGCAGCTGGAACTCATCAATCTCTCAACCAGTATCTTACCGGTAGTTTGGACATCGATGACGAAATGGACGAGGATGTAGAGACCGATCCTGACCTTGACATTGATAGCAGTGGTGAAATAGTTTATGCAATGTAA 1098 0.4226 MDPCKHTVGAGGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKQTDQLVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKFSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVQISPECRHLISRIFVADPAQRISIPEIRNHEWFLKNLPADLIVGNTTNDQFQEPEQPMQSVEEIMQIISEATIPAAGTHQSLNQYLTGSLDIDDEMDEDVETDPDLDIDSSGEIVYAM 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02778 365 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 15 360 - -
Car04g02778 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Car04g02778 365 CDD STKc_SnRK2-3 23 279 - -
Car04g02778 365 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02778 365 SUPERFAMILY Protein kinase-like (PK-like) 18 313 IPR011009 -
Car04g02778 365 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02778 365 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Car04g02778 365 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Car04g02778 365 Gene3D Transferase(Phosphotransferase) domain 1 100 288 - -
Car04g02778 365 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02778 365 PANTHER SERINE/THREONINE KINASE 15 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02778 Car-Chr4 53861276 53864698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02778 17 289 CBL-interacting serine-threonine protein kinases AT4G24400 43.110 3.52e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Car04g02778 Pkinase 3.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02778 K14498 - gmx:100804702 680.248