Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02771 ATGCCACGCCCTAGTTTTCATAAGCTTATTCTCCCCATAACACTTCAATCTAGACAACTGAGGATTCCAGATAATTTTCTGAGGAAATATGGCGCCCAGCTTTCGGCTATTGCTACCCTAACTGTTCCTGATGGTACCGTCTGGCGATTAGGGTTAAAAAAGGTCGACAACAGAATTTGGTTCGTCGATGGTTGGCAAGATTTTGTTCAACGCTACTCCATTGGTATCGGATACTTCTTAGTATTCATGTATGAAGGAAGTTCATCCTTCATCGTTCATATCTTCAATATGAGTACTTCTGAGTTAAACTATCAATCAGCCATGAGAAGCCGTAACGAAGGGCCCTGCTATCCAAATTATCATCACATTTTTGACGAAATGGAAGATGTTGATTCCTTCGACTTCTTGGATTCGTCACCTTCAAACCTTACTCCTGGTGCATTGCAAGACAAGGTTTTTGCTGGATCTATAGATCAGCTGTCACAGGGAAAGAATCACACTCCATCGTTGCAGAATTTGTTTAACGGCGGGTCGAAACTCAACCGCGTTAACTGGGGAGATATCGGCGGCGCTCTTTCTTCTAAAAGTCCCAATCAGTCAACCAGAGATATTGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAAGTCTACTGAAGAACTGAAATTGCGCTATCCTAATGAGGAAGGGGTGAATAATAATAGTAGTAATAAACCTGCGAGAAAGAAGCGGAAATCAGAACTGAAAGATGCTCAGGAACCCTCGGGTGACAATGAAGATGAAGCGGAAATGCGCTATCGATTCTACGAAAGTGCATCTGCTAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCGATTAATGATGCAAAAGCGTTTGAACCATCTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCCGAAAAGAATCTGAACGGTGTTTCAGGATTCATTAAACTTCAAACCCCCGATGGAAGACAGTGGCCTGTTCGCTGCCTTTATAGAGGCGGCCGAGCTAAGTTAAGCCAAGGATGGTATGAATTTACATTAGAGAACAATTTAGGCGAAGGTGATGTTTGCGTTTTCGAGCTGCTTAGAACCAGAGATGTGGTGCTGCAAGTTACTTTATTCCGCGTAGCTGAGGATGAATCAGGGTTATTCAACCCTTCGATGCAGCCGAACCAAAACGTGAGCCATGCAAAACTGTTGAACCCTCACTTGCAGCACCGTATCAGCACAACCAAATCTGTTAAAAATTAG 1305 0.4299 MPRPSFHKLILPITLQSRQLRIPDNFLRKYGAQLSAIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYSIGIGYFLVFMYEGSSSFIVHIFNMSTSELNYQSAMRSRNEGPCYPNYHHIFDEMEDVDSFDFLDSSPSNLTPGALQDKVFAGSIDQLSQGKNHTPSLQNLFNGGSKLNRVNWGDIGGALSSKSPNQSTRDIGVQFNAVEFKKSTEELKLRYPNEEGVNNNSSNKPARKKRKSELKDAQEPSGDNEDEAEMRYRFYESASARKRTVTAEERERAINDAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTPDGRQWPVRCLYRGGRAKLSQGWYEFTLENNLGEGDVCVFELLRTRDVVLQVTLFRVAEDESGLFNPSMQPNQNVSHAKLLNPHLQHRISTTKSVKN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02771 434 Gene3D - 277 397 IPR015300 -
Car04g02771 434 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Car04g02771 434 SUPERFAMILY DNA-binding pseudobarrel domain 293 393 IPR015300 -
Car04g02771 434 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Car04g02771 434 PANTHER B3 DOMAIN-CONTAINING 1 424 - -
Car04g02771 434 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Car04g02771 434 Pfam B3 DNA binding domain 14 96 IPR003340 GO:0003677
Car04g02771 434 Pfam B3 DNA binding domain 303 393 IPR003340 GO:0003677
Car04g02771 434 MobiDBLite consensus disorder prediction 223 262 - -
Car04g02771 434 SMART B3_2 300 395 IPR003340 GO:0003677
Car04g02771 434 SMART B3_2 6 98 IPR003340 GO:0003677
Car04g02771 434 CDD B3_DNA 298 393 IPR003340 GO:0003677
Car04g02771 434 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 424 - -
Car04g02771 434 Gene3D - 1 99 IPR015300 -
Car04g02771 434 MobiDBLite consensus disorder prediction 239 262 - -
Car04g02771 434 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02771 Car-Chr4 53781143 53784637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02771 1 394 B3 DNA Binding Superfamily AT3G18990 49.875 2.23e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g02771 B3 1.1e-17 CL0405