Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02758 ATGGCGGAACATCTAGCATCAATATTCGGCACAGAAAAAGACAGAGTAAACTGTCCATTCTACTTTAAGATCGGCGCGTGCAGACACGGCGACCGTTGCTCGCGTCTCCACAACAGACCAACGATTTCCCCAACCCTCCTCCTCTCCAACATGTACCAACGTCCTGACATCATAACCCCCGGCGTCGACCCTAACGGTCAACCCATCGATCCACGTCAGATCCAACAACACTTCGAAGATTTCTACGAAGATATCTTTCTCGAACTTTCGAAATTCGGTTACATCGAAACCCTAAACGTTTGCGATAATCTCGCCGATCACATGATCGGTAATGTTTACGTTCTGTTTCGTGAGGAGGATCACGCTGCGGCCGCTTTGGCTTCGCTGCACGGGAGGTTTTACTCCGGTCGTCCGATTTTAGCTGATTTTTCGCCGGTGACAGATTTTCGTGAAGCCACGTGTCGTCAGTATGAGGAGAATAGTTGTAACCGTGGCGGTTATTGTAATTTTATGCATGTTAAGAAAATTGGTAGGGAGTTGAGGAGGAAATTGTTCGCGTCGCagcggagtaggagcaggagtcggagcaggagTAATAGTCCTCGTCGGAGAAGAAGCGGTGATCGTGGAGATCGAGAGAGGCGTGATAGGGATCGAGATTATGAATCTCGTGGAAGAAGAAGTAGTgatagggatagggatagggttagggatagggatagtagggatagggaGGGAGGGGGGAGGAGGAGAAATGGGAGTTCGGCGAGGGAAGGGAGCGAGGAAAGGCGAGCGAGAATCGAGCAATGGAATAGAGAAAGAGAGGAGAAGCTGTGA 837 0.4492 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFLELSKFGYIETLNVCDNLADHMIGNVYVLFREEDHAAAALASLHGRFYSGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGRELRRKLFASQRSRSRSRSRSNSPRRRRSGDRGDRERRDRDRDYESRGRRSSDRDRDRVRDRDSRDREGGGRRRNGSSAREGSEERRARIEQWNREREEKL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02758 278 Gene3D - 43 145 IPR012677 -
Car04g02758 278 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Car04g02758 278 SUPERFAMILY RNA-binding domain, RBD 77 149 IPR035979 GO:0003676
Car04g02758 278 SMART rrm2_1 72 142 IPR003954 GO:0003676
Car04g02758 278 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 277 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 1 277 - -
Car04g02758 278 MobiDBLite consensus disorder prediction 201 278 - -
Car04g02758 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Car04g02758 278 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 PRINTS U2 auxiliary factor small subunit signature 165 177 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car04g02758 278 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Car04g02758 278 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Car04g02758 278 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 173 IPR000571 GO:0046872
Car04g02758 278 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Car04g02758 278 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Car04g02758 278 Coils Coil 260 278 - -
Car04g02758 278 CDD RRM_U2AF35B 44 145 - -
Car04g02758 278 MobiDBLite consensus disorder prediction 185 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02758 Car-Chr4 53518452 53521706 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car04g02758 zf-CCCH 8.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02758 K12836 - cpap:110817325 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02758 04 53518452 53521706 Car04g02758 04 53518452 53521706 ECH