Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02755 ATGGAAAAAGTAGctcctcctcctcttcctcttccttttcatcctcctATGTTAACAAATCCATTTTATAACACTTCATCAAATAACAAGAAACGTGATCTATCATACGACGTCGTTCACATACCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGATTCGGTTCGATTCATCGCAAAATcctccaacaccaccaccaccaccaccaccaTCTCACAAGACGAAGAAACTCTAAAATTGAATCTCGGCGGCGGTTGCGGCAGCGTTAACAATAGAGCAAACAAACGAGTTCGTTCAGGATCTCCTTCTGGAACGCCGTCGTATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTATCGAAAGCGAAGGATTATCATCGAAGACATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAAGCGTTGCTTGGGAATCAAATGCAAAGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTGTTGGAGTTTGATGAAGGGAAACGGAGCTGTCGTCGGAGACTTGCGGGACACAATCGTCGGAGGAGAAAGACGCAGGCTGATGAGGTGGCTTCTCCTCCGTTGAATCAGGTTGCTGTTGCGGCTAATTTGGAAATTTTTAACTTGTTGACGGCTATTGCCGATGGTTCTCAAGGAAAATTTGAGGAAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAGATTCTGAATAGGTTTCCTTTACCTGCTGATCTTACAGCAAAGTTGCTTGATGTTGGTAATTTGAATGCGAAAAAAGATGATAATGTGCAAATGCAAACTTCATCCTCCTATCATCATCACGACGACCAACCGAACAATGCCCCCTCTGCCCCGTTAACTATGGACTTACTTGCTGTTCTTTCGACCTCTCCATCTGCACCTGCTCAAAATGGCAGCAACACATCCATGACTAGTGCGGACCAGATGAGAGAACAGCAATTCACTTCAGTCGTTGGAGAAAGAAGCAGCGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAAGAGGATGTTCGAGTTAATTTGCCACTGCAACTTTTTAGCTCCTCTCCTGAAGATGAAAGCCGGATGAAATTGTCATCTCCGCAAAAGTATTTCTCGTCGGATAGTAGTAACCCTGTTGACGAGAGGTCACCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAGGGTGGGATTAGAAGTCATAACCGTAATAGCATTTCAATTGGAATAGGAGTCAATGCAAATAAGGAAACTAGTCAAAGTCATAGTTGTACTGTCCCACTTGATCTTTTTAAAGGGTCAAAATCAAATAACATGATTCAACAGTCTAGTTCAGTTCAAAGTGTTCCATTTCAAGCTGGTTATACATCTTCAAGTTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACTGGGAGAATAATGTTTAAATTATTTGACAAGCATCCTAGCCATTTCCCGGGAACATTGCGAACGCAGATTTACAATTGGCTTTCTAACCGACCATCAGATTTGGAGAGCTACATAAGGCCCGGCTGTGTCGTCCTATCGATTTATGCTACAATGTCTTCAGCTGCATGGGCGCAATTAGAAGAAAACTTCATCCAACGTGTTCATTCTTTAATTCATATCTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTCATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAAGATACGCATGTGCAAACCATGGGGATCATGGAGGTCTCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTCAGTGGACAAGAAACTTCAATGTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACGAAGATACATTGCACTGGTGCTGACTGTTACACGTCATCAGAAGTTATAGGATCTCAATATCATGGTATGGTCTATGATGAGATAAGATTGGGTGGATTTAAAGTTCAGAATACATCTCCTAGTGTTCTAGGTCGTTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGAACCTGTTTTCCAGTCATAATAGCCGATGCAGCCATTTGCAAAGAATTGAGACCACTTGAGTCTGAATTTGATGAAGAGGAAAAAACATGTGATGCCATTTCAGAAGACCGTGAACATAATTTTCGGAGGCCCAAGTCAAGGGAGGAGGCTCTACACTTTCTGAATGAGCTTGGCTGGTTGTTTCAAAGGGAAAGGTTCTCTAATGTGCACGAGGTTACAGATTATTCCCTTGACAGGTTCAAATTTGTACTCACGTTTTCCGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATGTGCTAGTTGATAAACACTTTGAAGGAGAAAGTTTATCAGTAGTGTCAATGGAGATGCTGAATGCAATCCAACCACTAAATAGAGCAGTGAAAAGAAAGTACATAAACATGGTTGATTTGCTCATCCACTATTCTATACCTATAAAAAATGATACAACAAAGAAATATGTATTTCCACCAAATCTTGAGGGCCCTGGTGGTATTACTCCCTTGCATTTGGCAGCATGTACATCGGATTCTGAGGGCTTAGTTGACTCTTTAACAAATGATCCACAGGAGATTGGGTTGAAGTGCTGGGAGACCCTTGTGGATGAAAATGGGCAAACTCCACAGGCCTATGCCATGATGAGAAATAATCACTCTTATAATAAGCTGGTTGCCCGTAAACTTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAAAATTGACAATGAGATAGAGCACCCATCACTGGAAATTGAGCTTATGCAAAAGCGAATTAACCAAGACAAACGAGTTGGGAACTCTTGCTCCAAGTGTGCAATTGCAGAAGTCCGCTACAAGAGAAGATTTTCAGGTTCACGGAGCTGGCTTCATGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTTCGTGGAACCCCGTCTGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGGATTTTGGGACAATGTAA 3054 0.4106 MEKVAPPPLPLPFHPPMLTNPFYNTSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSVRFIAKSSNTTTTTTTISQDEETLKLNLGGGCGSVNNRANKRVRSGSPSGTPSYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQADEVASPPLNQVAVAANLEIFNLLTAIADGSQGKFEERSQVPDKEQLVQILNRFPLPADLTAKLLDVGNLNAKKDDNVQMQTSSSYHHHDDQPNNAPSAPLTMDLLAVLSTSPSAPAQNGSNTSMTSADQMREQQFTSVVGERSSGSSQSPNDDSDCQEDVRVNLPLQLFSSSPEDESRMKLSSPQKYFSSDSSNPVDERSPSSSPPVVEMNFGLQGGIRSHNRNSISIGIGVNANKETSQSHSCTVPLDLFKGSKSNNMIQQSSSVQSVPFQAGYTSSSSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSNRPSDLESYIRPGCVVLSIYATMSSAAWAQLEENFIQRVHSLIHISDSDFWRNGRFLVHSGSQLASHKDGKIRMCKPWGSWRSPELISVSPLAIVSGQETSMSLKGRNLSAPGTKIHCTGADCYTSSEVIGSQYHGMVYDEIRLGGFKVQNTSPSVLGRCFIEVENGFKGTCFPVIIADAAICKELRPLESEFDEEEKTCDAISEDREHNFRRPKSREEALHFLNELGWLFQRERFSNVHEVTDYSLDRFKFVLTFSVERNCCMLVKTLLDVLVDKHFEGESLSVVSMEMLNAIQPLNRAVKRKYINMVDLLIHYSIPIKNDTTKKYVFPPNLEGPGGITPLHLAACTSDSEGLVDSLTNDPQEIGLKCWETLVDENGQTPQAYAMMRNNHSYNKLVARKLSDRQRSEVSVKIDNEIEHPSLEIELMQKRINQDKRVGNSCSKCAIAEVRYKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPSVGSVSPFRWENLDFGTM 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02755 1017 MobiDBLite consensus disorder prediction 299 341 - -
Car04g02755 1017 Pfam SBP domain 112 185 IPR004333 GO:0003677
Car04g02755 1017 MobiDBLite consensus disorder prediction 352 397 - -
Car04g02755 1017 MobiDBLite consensus disorder prediction 299 400 - -
Car04g02755 1017 SUPERFAMILY SBT domain 110 190 IPR036893 GO:0003677|GO:0005634
Car04g02755 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 31 1017 - -
Car04g02755 1017 ProSiteProfiles Zinc finger SBP-type profile. 109 186 IPR004333 GO:0003677
Car04g02755 1017 MobiDBLite consensus disorder prediction 267 286 - -
Car04g02755 1017 MobiDBLite consensus disorder prediction 459 479 - -
Car04g02755 1017 SUPERFAMILY Ankyrin repeat 765 910 IPR036770 -
Car04g02755 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 1017 IPR044817 GO:0003677
Car04g02755 1017 Gene3D - 104 173 IPR036893 GO:0003677|GO:0005634
Car04g02755 1017 Gene3D - 759 948 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02755 Car-Chr4 53470090 53476420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02755 21 1017 SBP-box Gene Family AT1G20980 50.847 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car04g02755 SBP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02755 - - gmx:100819004 1388.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02755 04 53470090 53476420 Car04g02755 04 53470090 53476420 ECH