Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02750 ATGGCTGCTTCTTCTTCATCTACACCTTTCTTGGAAATCAGACAAGAAATTCATCAAAGTCAGATTACACAAAATCAATCTTCCACAGCTGCTTCTTCATCAACTGTTTTGCCTCAGAAAAAAAGGAGGAATCAACCTGGAACACCATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAATAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAACAAAATTTGCAACTACACAGAAGAGGACACAACTTGCCTTGGAAGTTAAAGCAAAAAAGTAACAACAAAGAAGCAAAGAGAAAGGTTTATTTGTGTCCAGAGGCAACATGTGTTCATCATGATCCTTCAAGAGCACTTGGTGATTTGACTGGAATTAAGAAACATTATTATAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAGTGTTCTAAAAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGGCGTGATAGTTTCATCACACATAGAGCCTTTTGTGATGCCCTAGCACATGAAAATTCAAGACACCCTTCAAACATGAACCCTTTAGGAGGAACTCATCATCATCATCTATTTGCCACAAACCACATGAGTTTAGGGTTATCCCAATTAACCTCTCAACTTCATCATCAAAACCAAAACCAAAACCAACAACCAACCACAAACAACATCTTAACCCTAGGAGGAGGACCCAACCCTACTTGTACACCAAAATATGAACACTTAATTtcacatccatcttcatcatcatttggtcaacaacaatcaccacaatcacctttcttcatcaatgatcatcatcatcCAAATCAAACTTTCCAAGACCTTCAATCTCATCAAACCCTACCATTCTCAAACAAACAACAACAACAACTTCATTTGCATGGCCTCATGCAACTTTCTCATGATCTTCAAGGACCAAACAATAACAACACAAACTCTTCATCATCACTTTCACCTTTTAATCTAAGCTTCTTCCCAAATAACAATAGTAACACAATGAATGATCAATTCAACAACAACATAAGTGAATCAGAAGCAACAACACTCTTCACCAATACTCATAATCATCATGGTTCAAGTTTTTCTTCAATCTTTGCAAATTCATCTATGCAACAACAAGAGAACATGTCATTGTCATCACCACACATGTCAGCAACTGCATTGCTACAAAAAGCTGCTCAAATAGGTTCAACAACAACAACAAATGGTGTTGAGTCAAATCAAACTCTTGCTACATATGGAAATGATGATCATAGTAGAAGAGATCAAGGAATAATAAGAACAATAAGCATGGAGAATGATCAACACCATCATGAACATCTACATGGATTGATGAACTCTTCAATATATGGGAATCATGATAACAACATTGCTCAATTTCACAATGTAGAAGAAGCTAAAAAGATGTCACAACAAAACCTAGGTGATTTGTGCTTTGGAGGGTCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAGTAGTACTAGTGGTGGAGGATTTTCACAAAGAGATCAACAATTACACTCCATCAGTAACATCAACAATATGGATCCTAAATTGGAATCAACACAACCAAATCAACCTTTTTGA 1701 0.351 MAASSSSTPFLEIRQEIHQSQITQNQSSTAASSSTVLPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNNKEAKRKVYLCPEATCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENSRHPSNMNPLGGTHHHHLFATNHMSLGLSQLTSQLHHQNQNQNQQPTTNNILTLGGGPNPTCTPKYEHLISHPSSSSFGQQQSPQSPFFINDHHHPNQTFQDLQSHQTLPFSNKQQQQLHLHGLMQLSHDLQGPNNNNTNSSSSLSPFNLSFFPNNNSNTMNDQFNNNISESEATTLFTNTHNHHGSSFSSIFANSSMQQQENMSLSSPHMSATALLQKAAQIGSTTTTNGVESNQTLATYGNDDHSRRDQGIIRTISMENDQHHHEHLHGLMNSSIYGNHDNNIAQFHNVEEAKKMSQQNLGDLCFGGSDKLTLDFLGVGGMVRNMSSSTSGGGFSQRDQQLHSISNINNMDPKLESTQPNQPF 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02750 566 MobiDBLite consensus disorder prediction 19 42 - -
Car04g02750 566 Gene3D Classic Zinc Finger 124 203 - -
Car04g02750 566 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 541 - -
Car04g02750 566 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Car04g02750 566 MobiDBLite consensus disorder prediction 269 299 - -
Car04g02750 566 MobiDBLite consensus disorder prediction 19 52 - -
Car04g02750 566 MobiDBLite consensus disorder prediction 236 258 - -
Car04g02750 566 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 541 - -
Car04g02750 566 Gene3D Classic Zinc Finger 52 120 - -
Car04g02750 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Car04g02750 566 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Car04g02750 566 MobiDBLite consensus disorder prediction 236 299 - -
Car04g02750 566 SMART c2h2final6 111 141 IPR013087 -
Car04g02750 566 SMART c2h2final6 146 166 IPR013087 -
Car04g02750 566 SMART c2h2final6 69 91 IPR013087 -
Car04g02750 566 Pfam Zinc finger, C2H2 type 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02750 Car-Chr4 53362471 53367559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02750 39 537 IDZ Gene Family AT2G02070 46.555 8.95e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02750 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02750 K25870 - gmx:102663407 588.186