Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02749 ATGAAACCCGACTTGTATGAAATCTCCGACGACGAATGGGATAATCACTCTTTCAAACCCTCTCGCGTTCTCAAACGACCTCGCTCTTCACCTCCACCTCTCGATTCCTTCGCTTATAAACCACCTCCTCAACTAACCGTTTCCACCGACGATGACGATTGCGTCGAAATCACGCCAAACTCCGTCAATCTCGATGAATTGGAAGATGCTGATGTCGACGAATGCGACGCAGCTCCTGCAGCGACTCGTGGACGGCGGTTCATAATTGACGACGACGAAGAAGACGATGGAGGTGATAGGAATGGAAGTGGTTCTGTTGATTTGTACGATATAGAGTCCACCgaggatgaggtagaagatgaaattgaagaggttgacgaagatgaTGTGGTTGGTAGGGCTTTACAAAAGTGCGCGAGGATTTCAGTTGAGTTGAAAGGCGAGTTGTTTGGTTCTTCGGGAGCCGCTTGTGAGAGGTATTCTGAGGTGGAGTCTTCTTCAGTCAGAATCGTTACTCAGGAGGATGTTGATGTTGCGTGCGGGTCTGAGGATTCGGATTTTCAACCTTTGTTAAAGCCGTATCAACTTGTTGGTGTCAATTTCTTGCTTTTGTTGTATCGGAAGCGTATTGGAGGAGCTATATTGGCAGATGAAATGGGGCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCATTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGCCCATCCTTTTCTGTTCTTCAATATCATGGGGCTGCACGCACAGCATACTGTAAGGAGTTGAGCTCCTTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGATGATCGTAAAATCTTGAAGCGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAGAATCTGATGTCTGTTGCTCGAAATGCGAACCAGCGCTTGATGTTGACAGGGACACCACTTCAAAATGATCTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTCGACTTAAAAAAGTTACTAAGTGCAGAAGATAGAGATTTAATTAGTCGTATGAAGTCTATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTGATGCAGCAACTTGTTCAAAAAACACAGCAGGTTGAATATGTCATAATGGAAAAGCAACAGGATCATGCTTACAAGGAAGCCATTGAGGAGTATCGTACTATTTCACAAGCTCGGTTAACAAAGTGTTCTGATCTGAACTCAAAAAATGTTCTTGAAGTTCTTCCTCGACGGCAAATAAATAATTATTTTGTTCAATTTCGCAAGATTGCAAACCATCCCTTGTTGATAAGGCGAATTTATAGTGATGAGGATGTCGTTCGCTTTGCTAGGAAGCTACATCCAATAGGGGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTCTTACTTCATTACGGTATCAATGATAAAAAGGGGATCCTTTCAAATAAGTATGTTATGCTTTCTGCAAAATGTCGGGCTTTAGCAGAACTTCTTCCATCGCTTAAGAAGAATGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTAGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACTATAGTCGACACGTTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACGAGAGCCGGTGGACAAGGTTTAAATTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAAATTGATAGACAAGCAGAAGATCGCTGTCATCGAATTGGTCAAACCAAGCCTGTAACCATATATAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCTAAGAGAAAGCTAGGATTAGATGCCGCTGTTCTTGAGTCGATGGAAGAGGTCAGCGAAGGAAACATGCCTGAGAAGACTATGGGAGAGATATTGTCTGCAATTTTGTTGAGTTAA 2223 0.417 MKPDLYEISDDEWDNHSFKPSRVLKRPRSSPPPLDSFAYKPPPQLTVSTDDDDCVEITPNSVNLDELEDADVDECDAAPAATRGRRFIIDDDEEDDGGDRNGSGSVDLYDIESTEDEVEDEIEEVDEDDVVGRALQKCARISVELKGELFGSSGAACERYSEVESSSVRIVTQEDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAARTAYCKELSSLSKSGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDRDLISRMKSILGPFILRRLKSDVMQQLVQKTQQVEYVIMEKQQDHAYKEAIEEYRTISQARLTKCSDLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVVRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGINDKKGILSNKYVMLSAKCRALAELLPSLKKNGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEEVSEGNMPEKTMGEILSAILLS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02749 740 CDD SF2_C_SNF 564 690 - -
Car04g02749 740 SMART ultradead3 187 392 IPR014001 -
Car04g02749 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 721 IPR027417 -
Car04g02749 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 417 IPR027417 -
Car04g02749 740 SMART helicmild6 596 679 IPR001650 -
Car04g02749 740 CDD DEXHc_Snf 191 384 - -
Car04g02749 740 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 66 738 - -
Car04g02749 740 Gene3D - 554 735 IPR027417 -
Car04g02749 740 PANTHER SNF2/RAD54 HELICASE FAMILY 66 738 - -
Car04g02749 740 Pfam SNF2-related domain 209 497 IPR000330 GO:0005524|GO:0140658
Car04g02749 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 382 IPR014001 -
Car04g02749 740 MobiDBLite consensus disorder prediction 1 21 - -
Car04g02749 740 Gene3D - 170 442 IPR038718 -
Car04g02749 740 MobiDBLite consensus disorder prediction 86 110 - -
Car04g02749 740 MobiDBLite consensus disorder prediction 1 54 - -
Car04g02749 740 Pfam Helicase conserved C-terminal domain 567 679 IPR001650 -
Car04g02749 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 737 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02749 Car-Chr4 53332909 53343903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02749 212 718 RAD5 or RAD16-like Gene Family AT5G22750 26.198 4.84e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g02749 SNF2_N 9.9e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02749 K14439 - gmx:100806323 1225.31