Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02747 ATGAATTCTCAAAACCCGAACATAACTTTCCCTTCCGCACCACCGGGTATTCCAATCCCAACTCCAATACTAACTCCGAAGCTCGAACCTCTCGACGAACATATCGAACAAACTCAACAACCCAACCTAAATGAGATACCGaacctaaatctcaacctaaatctcaacctcgatctcGTGTGTGAAGAAACCCTAAACGACAATAACAGCAACCAAAACGCCAACGTGTATGCTGAGTTTAATCGAGTTTCAGAGCTTTTCCGAACCGCGTTCACAAAAGGACTTCAACAAATTCCAAAAAACGAAGTCATTGATGAAGATCCAAATTCACGCGCCATCATTCCCGTTCCTGTTCCCGACGCGCTGCAAAATTACGACTCAACCCCTTCGGCGGGTGAAGTAACCGCACAGAAGATTCCACGGCGGTGGAAGGAGCTTGTTCGCGTGACGGATCTTGGATTAACTGAACAGCGACATTTTCGCGACCTTGTTCGGAGAACGAGAATGGTTTACGATTCGGTTCGTGTTTTGGCGGCAGTTGAAGAAGAACGGAAAATCGATGTTCGGAAAGTGAGAAGCGATTTGAGAGCTTCTGCTTTGATGAGAAACTGTGGTTTGTGGTTGAATCGCGATAAGCGAATCGTTGGCGCAATTCCTGGTGTTTGTATTGGTGATGTTTTTCTTTATAGAATGGAGTTGTGTGTTGTTGGTTTGCACGGTCAACCACAAGCTGGAATTGATTATTTACCGGCGAGTATGAGTTCGAACGGGGAACCGATTGCTACTAGTGTGATTGTTTCtggtggttatgaagatgatgttgatgaaggtgatgtgattatTTATTCTGGTCATGGTGGTCAAGATAAGCATTCAAGGCAAGTTTTTCATCAGAAGTTGGAGGGTGGTAACCTTGCCATGGAAAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGCGGGGTTCGGTGTGAAGGTACAACTTCGGCTTCTGGTAAGGTTTATGTTTATGATGGATTATATAGAATACTTGAATGTTGGTTTGATGTTGGTAAATCTGGTTTCGGTGTTTATAAGTATAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGGTTCTTAAGGAAGCTCTTATGCTTAGGAGAGATCCATTGTGTTTTAAACCTATGTGTGTTTTTTCTCTCGATGTTTCGAATAGTAAGGAGAATGTTTGTGTGAGGCTCTTTAATGATATTGATAGGAATCACGATCCTTTGTGTTTTGAGTATCTTCCGAAGACTACTTTTCCGCAGTTTGTTTTTCATTCGAGTGGGAAAGGTACGGGTTGTGAGTGTGTGGATGGTTGTGGAGACGGATGCTTTTGTTCGATGAAAAATGGCGGCGAGTTTCCTTATAGTCAAAGTGGGCTTCTCATGAGAGGGAAACCGTTGATTTTTGAATGCGGACCTTTTTGTCGTTGTCCGCCTCATTGTCGGAACCGCGTCACGCAAAAGGGGCTTGGACATAGGTTGGAAGTGTTTAGATCTAAGGAGACTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCTGGCGCTTTTATATGTGAGTACACCGGGGTTGTTTTGACTAGGGAGCAAGCGCAAATTTTGACCATGAATGGTGATTCATTGATATATCCTAATCGGTTTTCAAATAGGTGGGCGGAATGGGGTGATTTATCTATGATAGATGCTAATTATGTGCGTCCGTCATTTCCATCGGTTCCTCCATTAGATTTTGCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGTTATATGAGTCATAGCTCAACTCCCAATGTGTTGGTTCAGTTTGTTCTGTTTGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTTGCCGATGATGAGTTGACTGGCAAGCTTGCTATTTGTAACTGA 1989 0.4158 MNSQNPNITFPSAPPGIPIPTPILTPKLEPLDEHIEQTQQPNLNEIPNLNLNLNLNLDLVCEETLNDNNSNQNANVYAEFNRVSELFRTAFTKGLQQIPKNEVIDEDPNSRAIIPVPVPDALQNYDSTPSAGEVTAQKIPRRWKELVRVTDLGLTEQRHFRDLVRRTRMVYDSVRVLAAVEEERKIDVRKVRSDLRASALMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRCEGTTSASGKVYVYDGLYRILECWFDVGKSGFGVYKYKLWRIDGQAKMGSLVLKEALMLRRDPLCFKPMCVFSLDVSNSKENVCVRLFNDIDRNHDPLCFEYLPKTTFPQFVFHSSGKGTGCECVDGCGDGCFCSMKNGGEFPYSQSGLLMRGKPLIFECGPFCRCPPHCRNRVTQKGLGHRLEVFRSKETGWGVRSLDLIQAGAFICEYTGVVLTREQAQILTMNGDSLIYPNRFSNRWAEWGDLSMIDANYVRPSFPSVPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLFDHNNLMFPHLMLFAMENIPPMRELSLDYGVADDELTGKLAICN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02747 662 Gene3D SET domain 378 661 IPR046341 -
Car04g02747 662 SUPERFAMILY SET domain 390 649 IPR046341 -
Car04g02747 662 ProSiteProfiles Pre-SET domain profile. 444 502 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g02747 662 Pfam Pre-SET motif 401 497 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g02747 662 Pfam SAD/SRA domain 215 369 IPR003105 -
Car04g02747 662 Pfam SET domain 516 648 IPR001214 GO:0005515
Car04g02747 662 Gene3D - 198 377 IPR036987 -
Car04g02747 662 SMART preset_2 397 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g02747 662 SUPERFAMILY PUA domain-like 197 378 IPR015947 -
Car04g02747 662 SMART set_7 505 654 IPR001214 GO:0005515
Car04g02747 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 658 - -
Car04g02747 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 24 658 - -
Car04g02747 662 ProSiteProfiles YDG domain profile. 216 365 IPR003105 -
Car04g02747 662 SMART G9a_1 211 369 IPR003105 -
Car04g02747 662 ProSiteProfiles SET domain profile. 505 648 IPR001214 GO:0005515
Car04g02747 662 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 49 662 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02747 Car-Chr4 53250073 53258951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02747 161 650 Su(var)3-9 homologs AT5G04940 38.922 3.43e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car04g02747 SAD_SRA 2.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02747 K11420 - gmx:100795514 978.393