Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02744 ATGTCTTCTCAACAATTTGATCATGGTGTCCACTTTTTCAAGGTTATTCTTCAAAAAAGCATTCAAGAAGGAAAACTGAAAGTGCCACAAAGTTTTGTGATGAAGCATTGGCAAGGAATAACAAATCCTATTACTCTAAGGCTTCCAAATATGACTCAATGGGAAGTTTTATGGGAGAAAACTTGTGATTATGATGTTTGTTTTTGCAAAGGTTGGAAAGAATTTGCAAATTATTTATCTTTGAGTGATTCACAATTTGTTGTGTTTAAATACCAAGAAAATTCGCACTTTAATGTGATTGTATTCGATAAATGTGGCTTAGAAATAACATATCCTTTAAGAGAAACTAGTGAAAAATGTGAAGATGTTGATGAAAGTGATTATTCTCTCGAAATAATTGAGGATCCTTCATCGTCGCGGCGTAAAAGACCAAAATCTCCATCATCGTCTTCTAAAATTTATAAGAAGGTGAAAATAATCTCAAAAGAACAAAAGGAATGTAAGCATGAGAAGAGCAAAGTCCTAGCACATGCAAGATTTTATAATTCTAAGCATATGGACAATGGTTGTAGCTGCGATAATATTCTTAAGAGAAGTAGAATTTTGCATGAGAAAGTGAAGAATGAATTCAGTTGTGAGAAGGACTTCTTTATATGTGTGATCCACAAGACATACATTGAGAGAGATCTCTTGGTCATACCAAGAGATTTTTCAAAAATACATCTACACAGAATGGAAGGAAGAAATGCTACAATTTTTGTTGACCAAAACAGAACATGGAATGTTGACTTGAAGCTCACTAGAAATGATCAATTTACACTTAGTGGTGGTTGGAATAAATTTCGTCATCACAATAATGTGAAATATGGTGATAAAAGGAAATCACCACTCCCTATTTTGAATGAAGGGTATAGAAATAAACAACATTAG 930 0.329 MSSQQFDHGVHFFKVILQKSIQEGKLKVPQSFVMKHWQGITNPITLRLPNMTQWEVLWEKTCDYDVCFCKGWKEFANYLSLSDSQFVVFKYQENSHFNVIVFDKCGLEITYPLRETSEKCEDVDESDYSLEIIEDPSSSRRKRPKSPSSSSKIYKKVKIISKEQKECKHEKSKVLAHARFYNSKHMDNGCSCDNILKRSRILHEKVKNEFSCEKDFFICVIHKTYIERDLLVIPRDFSKIHLHRMEGRNATIFVDQNRTWNVDLKLTRNDQFTLSGGWNKFRHHNNVKYGDKRKSPLPILNEGYRNKQH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02744 309 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 291 - -
Car04g02744 309 Pfam B3 DNA binding domain 12 103 IPR003340 GO:0003677
Car04g02744 309 Pfam B3 DNA binding domain 216 291 IPR003340 GO:0003677
Car04g02744 309 SUPERFAMILY DNA-binding pseudobarrel domain 212 291 IPR015300 -
Car04g02744 309 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Car04g02744 309 Gene3D - 197 292 IPR015300 -
Car04g02744 309 MobiDBLite consensus disorder prediction 289 309 - -
Car04g02744 309 SMART B3_2 12 105 IPR003340 GO:0003677
Car04g02744 309 SMART B3_2 216 307 IPR003340 GO:0003677
Car04g02744 309 Gene3D - 6 105 IPR015300 -
Car04g02744 309 ProSiteProfiles B3 DNA-binding domain profile. 216 309 IPR003340 GO:0003677
Car04g02744 309 CDD B3_DNA 11 103 IPR003340 GO:0003677
Car04g02744 309 PANTHER B3 DOMAIN-CONTAINING 8 291 - -
Car04g02744 309 CDD B3_DNA 231 291 IPR003340 GO:0003677
Car04g02744 309 ProSiteProfiles B3 DNA-binding domain profile. 11 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02744 Car-Chr4 53221071 53223896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02744 12 127 B3 DNA Binding Superfamily AT1G49475 38.793 3.11e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g02744 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02744 - - cam:101498848 563.918