Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02742 atgtcatttaatttctCTCGAGAGTTCTTCAAGATAATGCAAAATGGTGAATTGCATAACGGAGAGCTTAAGGTTCCCAAATCTTTTGTGAAGTTACATTGGAAAGAAGTATCAAACCCATTATTCCTTACACTACCAAATGGTACTAAACATGAAATATGTTGGGTGGAACGCAAAGGTGATATTTGGTTTCAAAACAAATGGGGAAATTTTGCAAAGTGTCTTAAATATGGACATCTTTTAATTTTTAAGTACTTAGGAGGACCCTATTTCAAGGTTAAGATATTTGGTGACAATAATATAGAAATAGATTATTCCAATATAAAATCTGTAGATGAAGTTGGTGAAGCTAAGGAAGGGAGTGATGATAGTGAAACACTCACACAAACTCGAAGGACAAAAAATGGCAAGAAAAAAGTTAATGTGGATTTTGATTCTACCCATAAAAAAATTTCAGGTAATAACAGAGGAGGCATGACTAAGAAAGCTAAAAGATGGCCAACAGTTGAAGCTGTTAATGAGAGAGAGAATCCAAGTTTTGAACTAACTATGTCAAGAACTTATGCCCAAGGTCATTTATTGGGGTTACCAAGTGACTTTTCAAGAAAATATTTGAACGAGTTCAAAGGGAGTGGAAATATAAGGGTTGGTGAAGATAGGGCTTGGAAAGTGAATTTCTACTTTGATGGTGTAAATAGAAGATCTATTGTGACCAAAGGTTGGAGGTTATTTGCAAAGGAATATAACTTGCAAGTTGGTGATAAATGTAAATTTGAAATGACTCAACTCAAACCACCTTCATTCACTATTACTATTAACAAGTTGCAAGGGATCTCTTCTTATGATGATATTGCAAAAAGAAAAGCCATTAAAGGAACTTCTTGGAGTTACCTCAAAATAAAAGATTTCGAGAATTTGGAAGGTGCTATTATGATGAAACAGAACACATTCAAGGTTTATGTGAATTCCTCATACCCGTATTTATCAAATGAGTTTTTGAAGACATTTAGTGATTGTCATGGAAAATTCTTGAAGTTGAAAGTGAAGGGAAAATCGTGGAATGTAAAAGTGAGTAATTATCCTAAAAGTGGTAGGTTATATGCAGGCTGGAGTCAATTTAAAGAAGGTAACAAATTGGAGTTTGGAGATATTTGTGTATTAGAGTTGATTGATGAGAAAAAATTTGTGTTTGAAGTTTCAATTGAAAGGAAACACCACTATGGTGTTTGA 1230 0.3325 MSFNFSREFFKIMQNGELHNGELKVPKSFVKLHWKEVSNPLFLTLPNGTKHEICWVERKGDIWFQNKWGNFAKCLKYGHLLIFKYLGGPYFKVKIFGDNNIEIDYSNIKSVDEVGEAKEGSDDSETLTQTRRTKNGKKKVNVDFDSTHKKISGNNRGGMTKKAKRWPTVEAVNERENPSFELTMSRTYAQGHLLGLPSDFSRKYLNEFKGSGNIRVGEDRAWKVNFYFDGVNRRSIVTKGWRLFAKEYNLQVGDKCKFEMTQLKPPSFTITINKLQGISSYDDIAKRKAIKGTSWSYLKIKDFENLEGAIMMKQNTFKVYVNSSYPYLSNEFLKTFSDCHGKFLKLKVKGKSWNVKVSNYPKSGRLYAGWSQFKEGNKLEFGDICVLELIDEKKFVFEVSIERKHHYGV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02742 409 ProSiteProfiles B3 DNA-binding domain profile. 311 405 IPR003340 GO:0003677
Car04g02742 409 Pfam B3 DNA binding domain 325 404 IPR003340 GO:0003677
Car04g02742 409 Pfam B3 DNA binding domain 186 262 IPR003340 GO:0003677
Car04g02742 409 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 272 - -
Car04g02742 409 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 315 404 - -
Car04g02742 409 Gene3D - 301 407 IPR015300 -
Car04g02742 409 Gene3D - 159 276 IPR015300 -
Car04g02742 409 MobiDBLite consensus disorder prediction 116 137 - -
Car04g02742 409 ProSiteProfiles B3 DNA-binding domain profile. 179 276 IPR003340 GO:0003677
Car04g02742 409 PANTHER B3 DOMAIN-CONTAINING 315 404 - -
Car04g02742 409 PANTHER B3 DOMAIN-CONTAINING 7 272 - -
Car04g02742 409 SMART B3_2 180 276 IPR003340 GO:0003677
Car04g02742 409 SMART B3_2 9 99 IPR003340 GO:0003677
Car04g02742 409 SMART B3_2 316 405 IPR003340 GO:0003677
Car04g02742 409 Gene3D - 4 100 IPR015300 -
Car04g02742 409 SUPERFAMILY DNA-binding pseudobarrel domain 320 403 IPR015300 -
Car04g02742 409 CDD B3_DNA 7 96 IPR003340 GO:0003677
Car04g02742 409 CDD B3_DNA 178 274 IPR003340 GO:0003677
Car04g02742 409 SUPERFAMILY DNA-binding pseudobarrel domain 8 98 IPR015300 -
Car04g02742 409 CDD B3_DNA 317 403 IPR003340 GO:0003677
Car04g02742 409 SUPERFAMILY DNA-binding pseudobarrel domain 174 271 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02742 317 403 B3 DNA Binding Superfamily AT3G18990 29.032 8.11e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g02742 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02742 - - mtr:MTR_1g035620 408.297