Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02727 ATGAGCAATGAATCTGACCTCGAAGTCTGTGATACTGCAATTCCACCTCAGAAAATCGGTAAAAGGGAGTGTGAGGATGAAGATGAGAAGGAAGTGATTACAAAGAAGCAGAAGAGAGATGAGGTTGTTGAGAAGCAAGAAAATAAGGAGGAAATTATTTCAAATCATTCTGAACATGATAAGAAACTTGAAGCTAAAAATGAAACTGCTACCGGTTGCGGTCCTTCAGAATCATTGGATGTTGGAAGCTCAGATTCTGATTCCCACAGAAGCTCTGATGGGGATAATCCCGATGATTTGGAAAGTCCAGAGTACAATGCGGGAGAAATAGAGGAAAAAGTCCCCAAAACACCTCAGGAAATGCATGAAACCCCACTCGCTCTGAACGAAAAATATGCTGCATCGAAGACAATATATGTTAGAAACCTGTCATACAGTGTGGAACGGGCTGACATGGAAAATCTTTTTAAAGATTGTGGTGAACTTGTTGCTGTTCGTTTCAACACAGATCGTGAAGGGAGGTTTAGAGGCTTTGGACATATCGAGTTTGGAACAGAAGAAGCAGCACAAAAAGCCCTTGAATTGGATAATACAGAATTGTTGAGACGTCGCATCAAAGTTGGTATAGCTCTAGAGAAGAATGAATATGCCCCCTATGGAAGCTCATTCCCTAAGGGTGGAAATCTTCAGTCTCACACTGTAAAGGGTTTTGACACATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAAGTCTTGCTGCATCAAAGACAATATATGTCAGAAACTTGTCATACATTGTGGAACGAACTGATATGGAAAATCTTTTCAAAGGTTGTGGAGAAATTGTTGATATTCGCCTCCATTCAGACCGCGAAGGGAGGTTTAAAGGCTTTGGACATGTTCAGTTTGCAACAGCTGAAGCAGCACAAAAGGCCCTTGCGTTGGATAATGTAGAATTTTTTAAACGCAACATCATAGTTGGTATAGCTTCGGAAAGGGGTAAATATAGCCCCAATAGAAGTGTTAGCAGCTGGGCCTGGAGCAGCTCATTCCAAAAGGATGAAAGATTACAGTCTCAAACTGCACCTGTGAAGTGTATTGATACAACCCTTGCAGACGACAAGGATATAGAGATGTTTGATGCTGTCTATTCTGAGAATAAACCTGAAACTCCAACTACACGAAAAGAAAAAAAAGCTGTATCAAAAACAGTATGTGTTAGAAACTTGTCATTTGGCGTGGAACGGGCTGATATTGAAAATATTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATGTGGATGTTGAGTTTGCAACAGAAGAAGCAACAGAAAAGGCTCTTGAGTTGGATCACAGAGAATTGATGAACCGTCCCATCAAAGTTGGTACTGCTTCGAAAGAGGGTGAATGTTTCCACAATAGAAGCTTGAGCATCTCATTCCAGAAGGGCGAAAATTTGCATCCTCTAACTGTATTTGTGATTGGATTTGATACATCCATTGCAGAAGAGAAGATAAAAGCTAGCCTGAAAAGACATTTCAGTCCTTGCGGAGAGATTACAAGGATATCGTTACCGAGATTTCCTGATTCTGGCACTGTTAAGGGGTTTGCGCATTTGGACTTCAAGGATGTTGATGGCTATAAGAAAGCACTACAACTTGATCAAACTGCGATTGGAGATTATTGGTTGTCAGTAGAAAAAGCAAAGCCAAGGTATAGACGTGATTATCAGGCTATAGGCGGTGGCAGAGGTGGTGGTGGTTATCACTATGGTGGAAGGGATGGAGGAGACCACGGTGGTAGAGTCGGTTGGGGAAGAAGTCATGGTGTTGGGAGGCACTGGACAGCCAATACCGAACACTGGTGA 1887 0.4187 MSNESDLEVCDTAIPPQKIGKRECEDEDEKEVITKKQKRDEVVEKQENKEEIISNHSEHDKKLEAKNETATGCGPSESLDVGSSDSDSHRSSDGDNPDDLESPEYNAGEIEEKVPKTPQEMHETPLALNEKYAASKTIYVRNLSYSVERADMENLFKDCGELVAVRFNTDREGRFRGFGHIEFGTEEAAQKALELDNTELLRRRIKVGIALEKNEYAPYGSSFPKGGNLQSHTVKGFDTSLVENKPKSPATPNESLAASKTIYVRNLSYIVERTDMENLFKGCGEIVDIRLHSDREGRFKGFGHVQFATAEAAQKALALDNVEFFKRNIIVGIASERGKYSPNRSVSSWAWSSSFQKDERLQSQTAPVKCIDTTLADDKDIEMFDAVYSENKPETPTTRKEKKAVSKTVCVRNLSFGVERADIENIFKDCGEIVDVRLHVDVEFATEEATEKALELDHRELMNRPIKVGTASKEGECFHNRSLSISFQKGENLHPLTVFVIGFDTSIAEEKIKASLKRHFSPCGEITRISLPRFPDSGTVKGFAHLDFKDVDGYKKALQLDQTAIGDYWLSVEKAKPRYRRDYQAIGGGRGGGGYHYGGRDGGDHGGRVGWGRSHGVGRHWTANTEHW 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02727 628 MobiDBLite consensus disorder prediction 18 67 - -
Car04g02727 628 SUPERFAMILY RNA-binding domain, RBD 404 477 IPR035979 GO:0003676
Car04g02727 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Car04g02727 628 SUPERFAMILY RNA-binding domain, RBD 249 348 IPR035979 GO:0003676
Car04g02727 628 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 489 614 - -
Car04g02727 628 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 338 470 - -
Car04g02727 628 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 65 336 - -
Car04g02727 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 212 IPR000504 GO:0003723
Car04g02727 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 473 IPR000504 GO:0003723
Car04g02727 628 SUPERFAMILY RNA-binding domain, RBD 494 606 IPR035979 GO:0003676
Car04g02727 628 Coils Coil 35 55 - -
Car04g02727 628 MobiDBLite consensus disorder prediction 1 105 - -
Car04g02727 628 Gene3D - 486 615 IPR012677 -
Car04g02727 628 Gene3D - 106 237 IPR012677 -
Car04g02727 628 SUPERFAMILY RNA-binding domain, RBD 128 228 IPR035979 GO:0003676
Car04g02727 628 MobiDBLite consensus disorder prediction 83 97 - -
Car04g02727 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 567 IPR000504 GO:0003723
Car04g02727 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 467 IPR000504 GO:0003723
Car04g02727 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 329 IPR000504 GO:0003723
Car04g02727 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 206 IPR000504 GO:0003723
Car04g02727 628 Gene3D - 354 477 IPR012677 -
Car04g02727 628 SMART rrm1_1 408 469 IPR000504 GO:0003723
Car04g02727 628 SMART rrm1_1 497 573 IPR000504 GO:0003723
Car04g02727 628 SMART rrm1_1 137 208 IPR000504 GO:0003723
Car04g02727 628 SMART rrm1_1 261 332 IPR000504 GO:0003723
Car04g02727 628 CDD RRM1_NUCLs 137 213 IPR034349 -
Car04g02727 628 Gene3D - 238 345 IPR012677 -
Car04g02727 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 577 IPR000504 GO:0003723
Car04g02727 628 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 338 470 - -
Car04g02727 628 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 65 336 - -
Car04g02727 628 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 489 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02727 Car-Chr4 52895471 52907442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02727 137 548 Eukaryotic Initiation Factors Gene Family AT4G34110 22.042 3.57e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02727 - K11294 mtr:MTR_1g036430 849.736