Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02711 ATGGGTGCAACAAATGTTATCAAAAGTAAAAGAAGAAAATTTGTTGGTAAGAGTTCAATTACTCAGAAAACAGCCAAATTGAGTAAAATTGATTTTGTTGATCAAAACTGGACCAACATGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTAATTTATCTACAGAAAATTGTTCATGAAGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCTGCATCTATTTCTGCTTCTGATGTATTAATGGAAGAGAAAAAGGACTTTAAGTTTGAAACAATTGTGCAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACATTCTCTAAGAGAGGAAGCAGAAAATATACATATCATGAATTTGAGGTTATGGCAAACAAGGCCTTTTCCAATAGATTTTGCAGTTCTGAAGCTATTTCTTCTTCTGATGTTGAAAAAGCATTCTGGCATGAAATGATGCATGGAGAGAAAAGAACAGTTGAATATGGAGTTAACATTGAGGGAAGTGCATTTTCATGTGATCCTAATGATAGGCTTGGAACAAGCAAATGCAATTTGAAGAATTTCGCGCGGCTGCTGCAGTCTTCGTTGCGTTTAGTTGACAGGGGAATTCCGGGAATAACTGATCCTATGCTTTACATTGCGATGCTTTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTACCATCACTCAGGTGCACATAAAACTTGGTATGGTGTACCTAGTTATGCAGCCTCTGAATTTGAAAAGACTGTATTGAATCATGTGTATTGCAATAAAGTTTTTATAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAACCATGTTCCCTCCTAATGTCTTGTTACAGCATGATGTGCCAGTTTACAAAGCTGTGCAGAAACCAGGAGAGTTTGTCATCACCTTTCCTAAATCATATCATGCTGGATTTAGTCATGGTTTCAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGTGCTGCAGCTAGCAAACGTTATGCACATCTCAAAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTTCTCTACAAGTCCTCAAAACTCAGAATTTCCAAGAACAAATTTGAAGAAAATGCATCTTATCGTGCTATTGTACCGTCTTTCTTGCATCTCATGCAATTTTATAAGACATCGTTATCGCGGTTGAACGGTTCGAGAAAGATGTCAAGCTCTTCAAATACATTATTAGGTTCTTTGATATGTAGCTTCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGAAATGCTATTCCTATCCAATTTGCCTTTTCCATGACATTACACCACAAACTTGCTTATGTGGTAGAAAATATACTGTTTTTAAGAGGAATGACATGTTGGAAATGGAAGATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGTATCGACGTGTCGTGTTTAACAAGTATATTCTCCTATAACATCAATGAATACATCAAAGATCTCAAGAATAATCATTGGCATGAAGAAAAAAGTGCTAGAAGAACAGTTAACTCTATAGGTGCGGCATCTAAACTTAAAAGAAGAGTCACAGACAACATGAAGCGCAATGTTGAAAAGAATAAGAAGAAATCAAAGAATCATTGTTGA 1722 0.3589 MGATNVIKSKRRKFVGKSSITQKTAKLSKIDFVDQNWTNMIPECPIYHPSEQEFEHPLIYLQKIVHEASKYGICKIVSPIAASISASDVLMEEKKDFKFETIVQPLRLSKWNEKDMITFSKRGSRKYTYHEFEVMANKAFSNRFCSSEAISSSDVEKAFWHEMMHGEKRTVEYGVNIEGSAFSCDPNDRLGTSKCNLKNFARLLQSSLRLVDRGIPGITDPMLYIAMLFSMFAWHVEDHYLYSINYHHSGAHKTWYGVPSYAASEFEKTVLNHVYCNKVFIEHGENGAFQFLAQKTTMFPPNVLLQHDVPVYKAVQKPGEFVITFPKSYHAGFSHGFNCGEAVNFAIGDWFPLGAAASKRYAHLKMLPIIPYEELLCKEAMLLYKSSKLRISKNKFEENASYRAIVPSFLHLMQFYKTSLSRLNGSRKMSSSSNTLLGSLICSFCHRDCYVAYLLCKKCYSYPICLFHDITPQTCLCGRKYTVFKRNDMLEMEDAAKSFQQEKECIDVSCLTSIFSYNINEYIKDLKNNHWHEEKSARRTVNSIGAASKLKRRVTDNMKRNVEKNKKKSKNHC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02711 573 SMART cupin_9 192 362 IPR003347 -
Car04g02711 573 Pfam JmjC domain, hydroxylase 222 345 IPR003347 -
Car04g02711 573 SUPERFAMILY Clavaminate synthase-like 203 382 - -
Car04g02711 573 PANTHER LYSINE-SPECIFIC DEMETHYLASE 20 571 - -
Car04g02711 573 SMART JmjN_1 43 79 IPR003349 -
Car04g02711 573 ProSiteProfiles JmjC domain profile. 186 362 IPR003347 -
Car04g02711 573 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 20 571 - -
Car04g02711 573 Gene3D Cupin 44 407 - -
Car04g02711 573 ProSiteProfiles JmjN domain profile. 44 85 IPR003349 -
Car04g02711 573 Pfam C5HC2 zinc finger 442 494 IPR004198 -
Car04g02711 573 Pfam jmjN domain 45 77 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02711 Car-Chr4 52365842 52369048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02711 41 504 JUMONJI Transcription Factor Family AT2G34880 29.456 7.02e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car04g02711 JmjC 2.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02711 - - gmx:100809650 811.216